Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5 98.7 1e-15 seq6 87.8 2e-12 >seq5 Length=22804910 Score = 98.7 bits (108), Expect = 1e-15 Identities = 110/147 (75%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 127531 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 127590 ||| | ||| ||||| | ||||| | ||| || ||||| | ||| |||||||| || Sbjct 2412325 GTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGGCATGAGTCC 2412384 Query 127591 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 127650 || ||||| | ||||||||||| ||| || || ||||||||||| || || || ||||| Sbjct 2412385 ACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACCTTCAACACA 2412444 Query 127651 CGCGAACGCAAATAGACGCTCGGCAAA 127677 |||||||| | | ||| || || || Sbjct 2412445 AGCGAACGCTACGATACGTTCAGCGAA 2412471 >seq6 Length=37079636 Score = 87.8 bits (96), Expect = 2e-12 Identities = 189/278 (68%), Gaps = 6/278 (2%) Strand=Plus/Minus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || |||||||||||||||||||| ||||| || || ||||| | |||||||| | | Sbjct 7695469 AAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--AC 7695412 Query 12852 ATACC--ACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATAC 12909 | || ||| || | | ||| |||| || || ||||| || ||||||||||| |||| Sbjct 7695411 CTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATAC 7695352 Query 12910 ACGGTTGATTTTCA-CGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCC 12968 | || || ||| | ||| ||||| | ||| | || || ||||| ||||| Sbjct 7695351 AAGG-TGCTTTGGATTTGGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAACACCA 7695293 Query 12969 ACAAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCC 13028 || || | ||| || || | | || | ||| || ||| || ||| | || || Sbjct 7695292 ACGAAAAGCTCGACGAACTCAGACGCAGCACAAGAGAAGAAAGGCACGCCTGCCTCTCCG 7695233 Query 13029 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 || | |||| ||| | || ||||| |||||||| || Sbjct 7695232 GCCACAGCTCTGGCCAAAAGCGTCTTGCCCGTCCCCGG 7695195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613294228644360