Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq6 93.3 3e-14 seq8 87.8 1e-12 >seq6 Length=37079636 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| ||||| || | ||| ||| || || ||||| ||||| ||| Sbjct 13447165 CCACCACGAAGACGCAACACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCC 13447106 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || || |||| |||||||| || || | || || || | ||||||||||| || Sbjct 13447105 AAGGTACGCCCATCTTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGA 13447046 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTA--ATCGTCGCTACTGTGTCTGCGCTTTCCA 39670 | ||||| || || || || |||| || |||| | || || | ||||||| Sbjct 13447045 ATCCCTTCCTTATCCTGAATCTTCGCTTTAACATTGTCG--ATCGTATCAGAACTTTCCA 13446988 Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || | ||| ||||| || || || | |||||| || ||||||||||| Sbjct 13446987 CCTCGAGAGTGATTGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 13446939 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||||| | ||| || ||||| || || || ||||| ||| Sbjct 13447621 CCACCACGTAGACGCAACACCAAATGAAGAGTACTCTCTTTCTGGATGTTGTAATCAGCC 13447562 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 ||| | | || || | || || ||| | || || || | |||||| |||| || Sbjct 13447561 AAAGTTCTGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAATCTCTGCTGGTCCGGAGGA 13447502 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | || |||||||| || ||| || | | | | || || | |||||| || Sbjct 13447501 ATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATAGTATCGGAGCTTTCAACT 13447442 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||||||||| || || ||||| || || || || ||||||||||| Sbjct 13447441 TCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 13447395 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||||| |||||||| | ||| ||||| || ||||| || |||||| Sbjct 19969989 CCACCACGTAGACGCAACACCAAATGGAGAGTAGACTCTTTCTGGATATTGTAGTCGGCC 19970048 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | || || | ||| || ||| | ||||| || | ||||| |||| || Sbjct 19970049 AGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAAAATCAATCTTTGCTGGTCCGGAGGA 19970108 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGCTTTCCAC 39671 | || |||||||| ||||| || | ||| | | || |||| | |||||| || Sbjct 19970109 ATACCCTCTTTGTCCTGGATTTTGGCCTTGA-CGTTGTCAATGGTGTCGGAGCTTTCAAC 19970167 Query 39672 GTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || ||||| || || || || || ||||||||||| Sbjct 19970168 TTCCAAGGTGATGGTCTTACCGGTCAAGGTCTTGACAAAGATCTGCAT 19970215 Score = 84.2 bits (92), Expect = 2e-11 Identities = 163/235 (69%), Gaps = 7/235 (3%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || |||| || ||| || |||||||||| || ||| || || || ||||||| Sbjct 33565314 CATC-CCACCTCTCAGACGTAGCACCAAATGCAGGGTTGATTCCTTCTGAATGTTATAAT 33565256 Query 39548 CGGCCAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATC 39605 | || || || || |||| || | |||||| || |||| || | | ||| || || Sbjct 33565255 CCGC--AAGCGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTGGTC 33565198 Query 39606 CGAGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTG-TGTCTGCGC 39664 || || | ||||| ||||| || || || | ||| | | || |||||| || Sbjct 33565197 CGGAGGGATCCCTTCCTTGTCTTGAATCTTCGCCTTGA-CGTTGTCAATGGTGTCTGAGC 33565139 Query 39665 TTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | || || || | ||||| |||||||| || | ||||| || ||||||||||| Sbjct 33565138 TCTCAACTTCTAGGGTAATAGTTTTACCAGTGAGGGTTTTCACAAAGATCTGCAT 33565084 >seq8 Length=40886855 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || |||||||| | ||| ||| || || || || ||||| || Sbjct 1188620 CCACCACGAAGACGAAGAACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCCGCA 1188679 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | |||| || | ||| || ||| | || || | | ||||||||||| || Sbjct 1188680 AGAGTCCTTCCATCTTCAAGTTGCTTACCGGCGAAGATAAGTCTCTGCTGATCCGGAGGA 1188739 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | ||||| ||||| | | | || | || | || || ||| |||||||| ||| ||| Sbjct 1188740 ATCCCTTCCTTGTC-CTGAATCTTAGCCTTCACATTGT--CTATTGTGTCTGAGCTCTCC 1188796 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | ||||| |||||||| || | || || ||||| |||||||| Sbjct 1188797 ACCTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTCACGAATATCTGCAT 1188846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347252029610843