Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq5 132 6e-26 seq6 120 4e-22 seq1 120 4e-22 >seq5 Length=22804910 Score = 132 bits (146), Expect = 6e-26 Identities = 278/412 (67%), Gaps = 7/412 (2%) Strand=Plus/Minus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 || ||| |||| |||| ||| || |||||||| |||||||||| ||| | ||| Sbjct 2412543 GCAATCGAAACGATTCCTTGTGTTACCAAGAAAGCTTCATGGGCTATGACTTGGATCGAT 2412484 Query 102159 ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTC 102218 | || | | || ||||| || || | || || || |||||||| ||||| ||| Sbjct 2412483 GGA---TCTCAAACATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATATTC 2412427 Query 102219 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 102278 ||||||||||||||||| | |||| ||||| ||||| || || |||||||| ||| | Sbjct 2412426 TTCTCTGGTTCCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGTTTA 2412367 Query 102279 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC--GGTGG 102336 ||||| ||||| | ||||| | ||||| || | ||| || || || | | | Sbjct 2412366 ACTTTCTCTAACGAATTAATCTCAAGAGACGAAGGTTTACACTGTGATTTCGCTTGTTTG 2412307 Query 102337 AACTTTTCAAATTATTGCGTATTAAACCAACGACTGAGACTATTCATTCTATTGTTAAGG 102396 | ||| || | || |||| || | | || | | | ||||||||| | Sbjct 2412306 A--TTTACACTCTGTTACGTACCAAGCTTAGTGAGGAAAGAGTGAAGTCTATTGTTTGCG 2412249 Query 102397 AAGCCGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCATGCGCTCTCATCGGTA 102456 | || ||||||||||||| | || ||| || || ||||| || || | | |||| Sbjct 2412248 ATGCGGTTGAGATTGAGAGAGAGTTTGTATGTGAAGCGCTTCCTTGTGCGTTGGTTGGTA 2412189 Query 102457 TGAATTCTGAAAAGATGTCCGAATATATTGAGTATGTATCTGATAGATTGTT 102508 ||||| |||| |||| | |||||||||| ||| | ||||| ||||| Sbjct 2412188 TGAATGGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGTTGTT 2412137 >seq6 Length=37079636 Score = 120 bits (132), Expect = 4e-22 Identities = 289/428 (68%), Gaps = 17/428 (4%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | || ||||| || | |||| || ||| |||| | || ||| Sbjct 13420288 TCAAGAATGTCTGCTCTGTTAGTTGCAGCAACTACAATAACACCGGTGTTACCTT--CAA 13420345 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | ||||||||||| || | ||||| |||| ||| ||||| | ||||||||| || Sbjct 13420346 ATCCATCCATCTCAGTTAGTAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCT---C 13420402 Query 16036 TACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 |||| || | | | |||| | || || |||||||| ||||||| ||||| |||| Sbjct 13420403 CACCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCAACAAAGACAATGC 13420462 Query 16093 ATGGTTGATTTTCGCGAGC-GACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 | || ||||| || ||| ||| ||||| || || | ||| || ||||| Sbjct 13420463 AGGGAGCGTTTTCCTTGGCTTTCTTGAAA-AGATCGCGGACTCTTGAGGCACCAACACCG 13420521 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | | | | || | || ||| || ||| || |||||| Sbjct 13420522 ACAAACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACC 13420580 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| ||| || | ||| || || |||||||| || ||| ||||| | || Sbjct 13420581 AGCAATAGCTTTTGCCAAAAGGGTTTTCCCCGTACCAGGAGGACCAATAAGGAGAACGCC 13420640 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | || ||| ||| ||| || | ||||||| || | ||| ||||| ||||||| Sbjct 13420641 TTTCGGGATCCGGGCACCAACCGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCCACAA- 13420699 Query 16331 CTCTTCCA 16338 |||||| Sbjct 13420700 --CTTCCA 13420705 Score = 89.7 bits (98), Expect = 6e-13 Identities = 194/284 (68%), Gaps = 16/284 (6%) Strand=Plus/Minus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||||||||||||||| ||||| ||||| ||||| || ||||| | |||||||| | Sbjct 7695470 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 7695413 Query 16034 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | || |||||| | | ||| | || || |||||||||||||||||||| || || Sbjct 7695412 CCTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 7695353 Query 16092 CATGG----TTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTG--GCGCCC 16145 || || ||| ||| || | ||||| | ||||| || || || | || || Sbjct 7695352 CAAGGTGCTTTGGATTTGGCCTTC----TCAAACAAATCCC-TA-ACCCTAGACGCACCA 7695299 Query 16146 ACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGAT 16205 |||||||| || | ||| || || | | || | ||| || ||| || || | Sbjct 7695298 ACACCAACGAAAAGCTCGACGAACTCAGACGCAGCACAAGAGAAGAAAGGCACGCCTGCC 7695239 Query 16206 TCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 16249 || || || | |||| ||| | ||| ||||| ||||| || || Sbjct 7695238 TCTCCGGCCACAGCTCTGGCCAAAAGCGTCTTGCCCGTCCCCGG 7695195 >seq1 Length=25238555 Score = 120 bits (132), Expect = 4e-22 Identities = 302/452 (67%), Gaps = 18/452 (4%) Strand=Plus/Plus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||| || ||||| | || | ||| ||||| || || | | || ||||| Sbjct 3040834 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 3040893 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 || | || | || ||| || |||| ||||||||||||||||| |||| ||||| Sbjct 3040894 GCAACTACGATAACACCGGT---GTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGA 3040950 Query 16002 TTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTT 16058 |||| ||| || || | ||||||||| || |||| || | | | ||| | Sbjct 3040951 TTAAGAGTCTGCTCTCTTTCATCATTACCT---CCACCAATTCCGGTTCCTCTTTGTCTA 3041007 Query 16059 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 16118 || || ||||| || ||||||| || || ||||| || |||||| || || Sbjct 3041008 CCAACAGCATCTATTTCATCAACAAAAACAATGCACGGCGCATTTTCCTTGGCTTTTTTG 3041067 Query 16119 AAGAGATCCCGTACACGCTT--GGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGG 16176 || ||||| || ||| ||| ||| || ||||| ||||||||||| ||||| | | Sbjct 3041068 AAAAGATCGCG--CACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAAC 3041125 Query 16177 CGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTC 16235 | | | |||| | |||||| ||| | |||||| || |||||| || | | || Sbjct 3041126 CCG-AGATTGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTT 3041184 Query 16236 TTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCACTTCCA 16295 ||||| ||||| || ||| | ||||| ||||| || |||||||| ||| || Sbjct 3041185 TTACCAGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCA 3041244 Query 16296 AAGTATCTCTCAGGTTGCTTAAGAAAATCCAC 16327 | | |||||||| | ||| | ||| ||||| Sbjct 3041245 GTGAACCTCTCAGGCTTCTTTAAAAACTCCAC 3041276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620526917035120