Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq1 93.3 5e-14 seq6 84.2 3e-11 >seq1 Length=25238555 Score = 93.3 bits (102), Expect = 5e-14 Identities = 296/452 (65%), Gaps = 18/452 (4%) Strand=Plus/Plus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || ||||| ||||| | || | ||| |||||||| || | | ||| || || Sbjct 3040834 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 3040893 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 |||| || | || || || | | || ||||| ||||| || || || ||||| || Sbjct 3040894 GCAACTACGATAACACCGGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 3040953 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAACGCTTCTT----A 11676 | ||||| || | ||||| || | | ||||| | ||| || || | Sbjct 3040954 AGAGTCTGCTCTCTTTCATCATTA-----CCT-CCACCAATTCCGGTTCCTCTTTGTCTA 3041007 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 || ||||| || || ||||| | || || || ||||| || | || | || | Sbjct 3041008 CCAACAGCATCTATTTCATCAACAAAAACAATGCACGGCGCATTTTCCTTGGCTTTTTTG 3041067 Query 11737 AAAAGTTCACGTACACGCTTC--GCTCCAACACCTACGAACATCTCAACGAAGTTTGCGG 11794 ||||| || || ||| ||| || |||||||| || ||||||||||| || | | Sbjct 3041068 AAAAGATCGCG--CACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAAC 3041125 Query 11795 CAGAACACTGAAT-GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTC 11853 | || | |||| |||||| ||| | ||||||||||||||| || | | || Sbjct 3041126 CCGAG-ATTGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTT 3041184 Query 11854 TTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCA 11913 ||||| |||||||| | |||| | || || | || ||||||||||||||| || Sbjct 3041185 TTACCAGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCA 3041244 Query 11914 AAGTAGCGCTCAGGCTTCTTGAGGAAGTCCAC 11945 | | | |||||||||||| | || ||||| Sbjct 3041245 GTGAACCTCTCAGGCTTCTTTAAAAACTCCAC 3041276 >seq6 Length=37079636 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/143 (74%), Gaps = 2/143 (1%) Strand=Plus/Plus Query 110272 ACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTC-GGT 110330 ||| || |||| | ||||||||| |||||||||||||||| ||| || | || | | || Sbjct 31020767 ACAAATCTGGGCAAAGCAATAGATGCAAGATTGCACACAGCAGTTTC-TGTTGGGCTAGT 31020825 Query 110331 GTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATT 110390 |||||| | ||||| || || || ||||| ||| ||| ||| | ||| | |||||| Sbjct 31020826 GTATTCAATGATTTCAGTGCATAAATTGGATGACTTTATGGTACCAAGGTTTTGCTGATT 31020885 Query 110391 CGATTTGGAGTTGCATGCATCCT 110413 ||| |||||||| ||||| Sbjct 31020886 GCTTTTTCTGTTGCATGAATCCT 31020908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588771544343800