Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq1 132 6e-26 seq6 127 2e-24 >seq1 Length=25238555 Score = 132 bits (146), Expect = 6e-26 Identities = 300/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Plus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||| || ||||| | || | ||| ||||| || || | | || || || Sbjct 3040834 CGGTCAAAACGTCCTGGTCTCAGCAAAGCGGAGTCAAGAATGTCTGCTCTGTTGGTTGCA 3040893 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 || | || | || ||| || | | ||||||||||||||||| |||| || || ||| Sbjct 3040894 GCAACTACGATAACACCGGTGTTACCCTCAAAACCATCCATCTCAGTCAGGAGCTGATTA 3040953 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA---CCAGCACTGCGTTGCTTTCCC 9368 | ||| || || | ||||||||| || |||| || | | | ||| | || Sbjct 3040954 AGAGTCTGCTCTCTTTCATCATTACCTCC---ACCAATTCCGGTTCCTCTTTGTCTACCA 3041010 Query 9369 ACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAG 9428 || ||||| || ||||||| || ||||| || || |||||| ||| ||| || Sbjct 3041011 ACAGCATCTATTTCATCAACAAAAACAATGCACGGCGCATTTTCCTTGGCTTTTTTGAAA 3041070 Query 9429 AGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAA 9488 |||||||| |||||| ||| || ||||| ||||||||||| ||||| | | | | | Sbjct 3041071 AGATCGCGCACCCTTGAGGCACCAACACCGACAAACATCTCAACAAACTCAGAACCCG-A 3041129 Query 9489 CATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACC 9547 |||| | |||||| ||| | |||||| || |||||| || | | || ||||| Sbjct 3041130 GATTGAAAAGAAGGGTACACCGGCTTCACCAGCGATGGCTTTTGCCAACAAGGTTTTACC 3041189 Query 9548 CGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCACTTCCAAAGTA 9607 ||||| || ||| | ||||| |||| || |||||||| ||| || | | Sbjct 3041190 AGTACCAGGAGGACCAACAAGGAGAACACCTTTCGGGATCTTGGCACCAACCGCAGTGAA 3041249 Query 9608 TCTCTCAGGTTGCTTGAGAAAATCCAC 9634 |||||||| | ||| | ||| ||||| Sbjct 3041250 CCTCTCAGGCTTCTTTAAAAACTCCAC 3041276 >seq6 Length=37079636 Score = 127 bits (140), Expect = 2e-24 Identities = 286/425 (67%), Gaps = 11/425 (3%) Strand=Plus/Plus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAA 9284 ||||| || || | | || || || || | |||| || ||| || | | ||||| Sbjct 13420288 TCAAGAATGTCTGCTCTGTTAGTTGCAGCAACTACAATAACACCGGTGTTACCTTCAAAT 13420347 Query 9285 CCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATA 9344 ||||||||||| || | || || |||| ||| ||||| | ||||||||| || | Sbjct 13420348 CCATCCATCTCAGTTAGTAGCTGATTAAGAGTCTGTTCTCTTTCATCATTACCTCC---A 13420404 Query 9345 CCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACAT 9401 ||| || | | | |||| | || || |||||||| ||||||| |||||||| || Sbjct 13420405 CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCAACAAAGACAATGCAG 13420464 Query 9402 GGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACA 9461 || ||||| ||| | | || |||||||| || ||| ||| || ||||| ||| Sbjct 13420465 GGAGCGTTTTCCTTGGCTTTCTTGAAAAGATCGCGGACTCTTGAGGCACCAACACCGACA 13420524 Query 9462 AACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGC 9520 |||||||| ||||| | | | | | || | || ||| || ||| || |||||| || Sbjct 13420525 AACATCTCAACAAACTCAGAACCAG-AGATGGAGAAGAAAGGCACACCAGCTTCACCAGC 13420583 Query 9521 AATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCG 9580 ||| ||| || | ||| || || |||||||| || ||| ||||| | || Sbjct 13420584 AATAGCTTTTGCCAAAAGGGTTTTCCCCGTACCAGGAGGACCAATAAGGAGAACGCCTTT 13420643 Query 9581 TGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 || ||| ||| ||| || | ||||||| || | ||| ||||| ||||||| | Sbjct 13420644 CGGGATCCGGGCACCAACCGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCCACAA---C 13420700 Query 9641 TTCCA 9645 ||||| Sbjct 13420701 TTCCA 13420705 Score = 105 bits (116), Expect = 8e-18 Identities = 194/282 (69%), Gaps = 12/282 (4%) Strand=Plus/Minus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||||||||||||||| ||||| || || ||||| || ||||| | |||||||| | Sbjct 7695470 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCC--A 7695413 Query 9341 CATACC--ACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATA 9398 | | || |||||| | | ||| | || || |||||||||||||||||||| |||||| Sbjct 7695412 CCTCCCATACCAGCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAAACAATA 7695353 Query 9399 CATGG----TTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCAC 9454 || || ||| ||| ||| | ||||| | ||| | |||||| || || || Sbjct 7695352 CAAGGTGCTTTGGATTT----GGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCAAC 7695297 Query 9455 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTC 9514 |||||| || | ||| || || | | || | ||| || ||| || || | || Sbjct 7695296 ACCAACGAAAAGCTCGACGAACTCAGACGCAGCACAAGAGAAGAAAGGCACGCCTGCCTC 7695237 Query 9515 ACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 || || | |||| ||| | ||| ||||| ||||| || || Sbjct 7695236 TCCGGCCACAGCTCTGGCCAAAAGCGTCTTGCCCGTCCCCGG 7695195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589775995540040