Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq3 457 1e-123 seq20831 421 8e-113 seq7 178 2e-39 seq2 114 2e-20 >seq3 Length=27950219 Score = 457 bits (506), Expect = 1e-123 Identities = 712/1014 (70%), Gaps = 3/1014 (0%) Strand=Plus/Minus Query 181424 TTTGACATCCTTGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGGTCTGGA 181483 ||||| || | ||||||||| | | || ||||||| ||||| || |||||||| Sbjct 12152902 TTTGATATTATGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTGGT 12152843 Query 181484 CTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGGGGCTGGCTCACTGGCACTACTTTT 181543 ||| | || ||||| ||| ||| | || | |||| ||| |||| || | || ||| Sbjct 12152842 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCTTT 12152783 Query 181544 GTTACGTCGTGGTACACCCACGGATTGGCGTCTTCCTACCTTGAGGGTGCTAATTTCCTT 181603 || || || ||||| || || |||||||| |||||| | || ||| ||||| Sbjct 12152782 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTAA 12152723 Query 181604 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACTTTGGGGT 181663 || || || | || || |||||| | | | | |||||| | | |||| |||||| Sbjct 12152722 ACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGT 12152663 Query 181664 CCTGAAGCTCAGGGCGATTTCGTCCGCTGGGTCCAACTTGGGGGACTCTGGGCTTTTGTG 181723 | |||||| || | ||||| || ||| ||| | || || |||| ||||||||| Sbjct 12152662 CTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTGTT 12152603 Query 181724 GCGCTCCACGGAGCCTTCGCTCTTATCGGTTTTATGCTCAGGCAATTTGAACTTGCTCG- 181782 || ||| |||| || || || | || |||||||| | | ||||||||||||||||| Sbjct 12152602 GCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTCGA 12152543 Query 181783 TCTAATCGGAATCCGACCCTACAATGCGATTGCTTTTTCCGGTCCTATTGCTGTATTCGT 181842 || || | | || || || ||||| || || || || ||||| || ||||| || || Sbjct 12152542 TCCGTTCA-ATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTTGT 12152484 Query 181843 CTCTGTATTTCTCATCTATCCTCTGGGACAATCCAGTTGGTTCTTTGCGCCGAGTTTCGG 181902 | ||| | || || ||||| ||||| ||||| |||||||||||||||| ||||| || Sbjct 12152483 TTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 12152424 Query 181903 TGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCAA 181962 ||| ||||| || || || ||| | || || |||| || ||||||||||||| | || Sbjct 12152423 TGTAGCGGCTATATTTCGATTCATCCTTTTT-TCCAAGGGTTTCATAATTGGATATTGAA 12152365 Query 181963 TCCCTTCCATATGATGGGTGTTGCTGGTATCCTGGGTGGCGCATTACTCTCTGCAATTCA 182022 || || ||||||||||| || | ||| | || || | ||| | || | || ||||| Sbjct 12152364 CCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATTCA 12152305 Query 182023 CGGTGTGACCGTGGAGAATACTCTGTATCAAGACGGTGACCAAGCAAATACTTTCAAAGC 182082 |||| || || || |||||| | | | |||| ||||| |||||||| ||| || Sbjct 12152304 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 12152245 Query 182083 ATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACAGCGAACCGCTTCTGGTC 182142 || | ||||||||| |||||||| ||||||||||| || || |||||||| ||||| Sbjct 12152244 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 12152185 Query 182143 TCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGT 182202 | |||| || |||| ||| |||||| | ||||| ||||||| |||| | ||||| Sbjct 12152184 ATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATTTGT 12152125 Query 182203 TCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGTCTTGCTCTCAACCTTCG 182262 | || | ||| | |||| ||| | | || | | || || ||| | ||||| | Sbjct 12152124 ATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTATG 12152065 Query 182263 TGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGACCCAGAGTTCGAGACGTT 182322 ||| |||||||| || ||||| |||| | | ||| | ||||| | | || ||||| || Sbjct 12152064 TGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGACTTT 12152005 Query 182323 CTACACAAAGAACATTCTCTTGAATGAAGGTCTGCGTGCATGGTTAGCACCAGTCGATCA 182382 | | || || || ||||| || || |||||| | ||||| ||| | || | | ||| | Sbjct 12152004 CAATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCTAGATAA 12151945 Query 182383 ACCACATGAGAACTTTGTGTTCCCTGAGGAAGTATTACCCAGAGGTAACGCACT 182436 || ||||| ||| || | |||| |||||| || |||| | || ||||| || Sbjct 12151944 GCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTACCACGTGGAAACGCTCT 12151891 >seq20831 Length=3535 Score = 421 bits (466), Expect = 8e-113 Identities = 570/792 (72%), Gaps = 2/792 (0%) Strand=Plus/Minus Query 179739 TGGGATAACTTCTGCGAGTGGGTAACCTCTACCAATAACCGCCTCTATGTCGGTTGGTTC 179798 |||| | |||||| | ||| ||||| || | || || || || | || ||||| Sbjct 793 TGGGGTCGCTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTT 734 Query 179799 GGCGTTCTGATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATC 179858 || ||| ||||||| || || | ||| | |||||| | || || |||| ||||| Sbjct 733 GGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATT 674 Query 179859 GCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTAT 179918 |||||||| || || || || ||||| || |||||||| || |||| || || | || Sbjct 673 GCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTAC 614 Query 179919 GGTAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTC 179978 || ||||| || || || ||||| || ||||| |||| || |||||| | || || Sbjct 613 GGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTT 554 Query 179979 TATCCCATCTGGGAAGCCGCATCGCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAA 180038 || || ||||||||||| ||||| |||| || ||||| || ||||| ||||||| || Sbjct 553 TACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAA 494 Query 180039 CTTGTCGTCTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTT 180098 || | || | ||||| | |||| | | || ||||||||||||||||||||| Sbjct 493 CTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTT 434 Query 180099 TCTTATCGCTTGGGTATGCGCCCCTGGATCTGC-GTAGCATATTCTGCTCCAGTCGCTGC 180157 || || |||||||||| || ||||| ||| || |||||||| ||||| || || || Sbjct 433 AGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGC 375 Query 180158 AGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCATTCTCTGACGCAATGCC 180217 ||| ||||||| ||| | | || || | |||||||| || ||||| | ||||| Sbjct 374 TGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCC 315 Query 180218 CCTCGGCATTTCTGGCACCTTCAACTACATGCTTGTTTTCCAAGCAGAGCACAACATCCT 180277 || || || ||||| || ||||||| ||| |||| ||||| || ||||||||||| || Sbjct 314 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 255 Query 180278 GATGCACCCCTTCCACATGCTGGGAGTAGCAGGTGTCTTCGGCGGTTCACTGTTCTCCGC 180337 |||||||| || |||||| | || ||||| ||||| |||||||| || | || || Sbjct 254 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGC 195 Query 180338 AATGCACGGTTCACTGGTTACCTCTTCACTGGTTCGTGAAACCACTGAAACTGAGTCCCA 180397 ||||| ||||| |||| || ||| || | | |||||||| |||| ||| || Sbjct 194 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 135 Query 180398 GAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCACATGG 180457 || | ||||||| || || ||||||||||| || |||||||| || ||||| ||||| Sbjct 134 TAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGG 75 Query 180458 ATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAACTCCCGTTCACTTCACTT 180517 || || || || |||||||||| ||||| |||||||| || ||||| | || || Sbjct 74 TTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTT 15 Query 180518 CTTCCTGGCAGC 180529 |||| | || || Sbjct 14 CTTCTTAGCGGC 3 >seq7 Length=29178675 Score = 178 bits (196), Expect = 2e-39 Identities = 202/271 (75%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 181935 TCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGTGTTGCTGGTATCC 181994 |||| || |||||||||||||| || || || ||||||||||| || || ||| | | Sbjct 25949508 TCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTAC 25949449 Query 181995 TGGGTGGCGCATTACTCTCTGCAATTCACGGTGTGACCGTGGAGAATACTCTGTATCAAG 182054 |||| | ||| | || | || ||||| |||| || || || |||||| | | | ||| Sbjct 25949448 TGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAG 25949389 Query 182055 ACGGTGACCAAGCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATT 182114 | ||||| |||||||| ||| || || | ||||||||| |||||||| |||| Sbjct 25949388 ATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATT 25949329 Query 182115 CAATGGTTACAGCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGA 182174 ||||||| || || |||||||| ||||| || ||||| || |||| ||| |||||| Sbjct 25949328 CAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAAC 25949269 Query 182175 GGTGGTTGCATTTCTTTATGCTCTTTGTTCC 182205 | ||||| |||||||||||| | ||||| || Sbjct 25949268 GTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq2 Length=28351830 Score = 114 bits (126), Expect = 2e-20 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 171909 CTGGACGCTGCAGATGAAGCGGGGGTTGATGCTCCATATTCCTGCCGTGCCGGTGCCTGT 171968 || ||||| || || ||||| || | ||| || || || |||||||| ||| | ||| Sbjct 3660654 CTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGTTCATGT 3660595 Query 171969 TCCAGCTGTGCTGGTAAACTTGAGAGTGGTACGGTAGATCAGTCAGAGCAATCTTTCCTT 172028 || |||||||| |||||| || || ||| | || ||||| || || || |||||| Sbjct 3660594 TCAAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTTGATCAATCTGACCAGAGTTTCCTC 3660535 Query 172029 GATGATGATCAAATGGACGCAGGATTCGTTCTGACCTGTGTTGCTTATCCTAC 172081 |||||||| || || | | |||||| ||||| || |||| |||||||||||| Sbjct 3660534 GATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTAC 3660482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610184908380840