Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq20831 408 5e-109 seq3 260 2e-64 seq7 122 1e-22 seq6 111 2e-19 >seq20831 Length=3535 Score = 408 bits (452), Expect = 5e-109 Identities = 536/740 (72%), Gaps = 2/740 (0%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCG 169501 |||| |||||||||||| | ||||| || |||| | || ||| | | ||| || Sbjct 744 TTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTA 685 Query 169502 TTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTT 169561 | ||||||||||| || ||||| || ||||| || || || | ||||| || | || | Sbjct 684 TCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGAT 625 Query 169562 CT-TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 || ||||| || || ||||| || || || ||||| || |||| | || ||||| Sbjct 624 CTCTTCTT-TACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATT 566 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCAGCAACTGTTGATGAATGGTTGTATAATGGT 169680 || | || || ||||| ||||||||||| ||| | |||||||||||| | || || || Sbjct 565 GGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGC 506 Query 169681 GGTCCTTATCAGTTGGTAATCTTCCACTTCCTTATTGGTATCTCAGCATACATGGGAAGA 169740 ||||||||| | | | | | ||||| | ||||| | | || ||||| | Sbjct 505 GGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGT 446 Query 169741 CAGTGGGAACTATCATACAGATTAGGAATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 169800 |||||||||| | | | | || |||||||||||||| ||||||||| || || Sbjct 445 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 386 Query 169801 CCAGTATCTGCTGCATTCGCTGTATTCTTAGTATACCCATTTGGTCAGGGTTCATTCTCT 169860 || || | |||||| ||||| ||||| | |||||| ||||||| || || ||| Sbjct 385 CCTGTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCT 326 Query 169861 GATGGTATGCCACTAGGTATCTCAGGTACTTTCAACTTTATGTTCGTTTTCCAAGCAGAG 169920 ||||||||||| ||||| ||||| |||||||||||||||||| | || ||||| || ||| Sbjct 325 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 266 Query 169921 CATAACATTCTAATGCATCCTTTCCACATGGCAGGAGTAGCAGGAATGTTCGGAGGATCT 169980 || |||||||| ||||| || || |||||| ||| ||||| || | ||||| || || Sbjct 265 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 206 Query 169981 TTATTCTCAGCAATGCATGGTTCACTTGTTACTTCATCTCTAATCAGAGAAACAACAGAG 170040 ||||| || ||||||||||| | || ||||| | | ||||| ||||| ||||| Sbjct 205 TTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 146 Query 170041 CAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAAGAAACATACAACATAGTA 170100 | || || || | ||||| | |||||||||||||||||||| |||||||| ||| Sbjct 145 AATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTA 86 Query 170101 GCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAACTCAAGA 170160 || || || ||||| ||||| || | |||||||| |||||| |||||||| || | Sbjct 85 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGT 26 Query 170161 AGTCTACACTTCTTCCTAGC 170180 | |||| |||||| |||| Sbjct 25 TCTTTACATTTCTTCTTAGC 6 >seq3 Length=27950219 Score = 260 bits (288), Expect = 2e-64 Identities = 680/1038 (66%), Gaps = 22/1038 (2%) Strand=Plus/Minus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 |||||| || | || ||||||||| ||| | | ||||| || |||| ||||||||| Sbjct 12152902 TTTGATATTATGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTGGT 12152843 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | | || | ||||||| ||| | ||||| Sbjct 12152842 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCTTT 12152783 Query 170649 GTTACATCATGGTATACACATGGTGTTGCTTCCTCATATCTTGAGGGATGTAACTTCCTA 170708 || || ||||||||||| ||||| | ||| || ||| | || || || || || | Sbjct 12152782 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTAA 12152723 Query 170709 ACAGCAGCAGTTTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 170768 || || || |||| || |||| | | | ||| | | |||| || ||||| Sbjct 12152722 ACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGT 12152663 Query 170769 CCTGAAGCACAAGGTTCATTTGTTCGTTGGTTACAACTCGGAGGTTTATGGAACTTTGTA 170828 | |||||||||| | ||| |||||||| ||| | || ||| | | | ||||| Sbjct 12152662 CTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTGTT 12152603 Query 170829 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCAGACAATTTGAGATCGCAGGA 170888 || | | || | |||| | | ||| |||| ||| | | |||||||| | || || Sbjct 12152602 GCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTCGA 12152543 Query 170889 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 170948 || | | ||||| || ||| |||||||||||| | ||||| || || | Sbjct 12152542 TCCGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTTGTT 12152483 Query 170949 AGCATCTTTCTGATCTATCCACTAGGTCAGCACAGTTGGTTCTTCGCACCATCATTCGGT 171008 || | || || |||||||| ||||| |||||||||| || || || ||| Sbjct 12152482 TTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 12152423 Query 171009 GTCGCAGCAATTTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 171068 || || || || ||||| | ||| | || | ||||| || || || | |||||| Sbjct 12152422 GTAGCGGCTATATTTCGATTCATCCT-TTTTTCCAAGGGTTTCATAATTGGATATTGAAC 12152364 Query 171069 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTATTATGTGCCATTCAT 171128 |||||||| |||||||| || | || |||| || | || | |||| || |||||| Sbjct 12152363 CCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATTCAT 12152304 Query 171129 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCAGTTTATACTGATAATAAAATT 171188 ||||| || || | || || || | ||||| || |||| | Sbjct 12152303 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGAT-----GGTG 12152261 Query 171189 CAAAGCACAACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATT 171248 |||| ||||||||||| ||| | || || || | ||||||||||| ||| | Sbjct 12152260 CAAA----TACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 12152205 Query 171249 ACAGCAAACAGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTA 171308 || || ||| | || |||||| | | ||||| ||||||| || || ||| | | ||| Sbjct 12152204 ACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 12152145 Query 171309 CACTTCCTTATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTA 171368 || ||| |||||| || || | || | ||| | |||| || | || | || Sbjct 12152144 CATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 12152085 Query 171369 GGTCTAGCACTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAA 171428 || ||||| | ||||| | || || || || || || || || | | ||||| ||| Sbjct 12152084 GGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAA 12152025 Query 171429 GACCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 171488 || | | || ||||||||| | ||||| ||||| ||| | || |||||||| | || Sbjct 12152024 GATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 12151965 Query 171489 TGGATGTCATCAGTTGACCAACCACATGAGAACTTCGTATTCCCAGAAGAAGTGTTACCA 171548 |||||| | | | || | || ||||| ||| | |||||| || || || ||||| Sbjct 12151964 TGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTACCA 12151905 Query 171549 AGAGGTAACGCACTTTAA 171566 | || ||||| |||||| Sbjct 12151904 CGTGGAAACGCTCTTTAA 12151887 >seq7 Length=29178675 Score = 122 bits (134), Expect = 1e-22 Identities = 165/228 (72%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 153747 GATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCAT 153806 ||||||| ||| ||| |||||||||||| |||| ||||| ||||| ||||||||| Sbjct 22863244 GATATTGTTGTTGGTTCGGCTCAAAGGTTTGGTGTTCCGATGGGTTATGGTGGTCCTCAT 22863303 Query 153807 GCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG-- 153864 ||||| || || || || || | |||||||||||| ||| ||||| || ||| | | Sbjct 22863304 GCTGCGTTTTTGGCTACTTCACAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGT 22863363 Query 153865 GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGC 153924 || ||| || ||| || || ||| | | | || | |||||||| || | Sbjct 22863364 GTTAGT--GTTGATTCCTTTGGGAAGCCAGCTTTGCGTATGGCGATGCAGACTAGGGAAC 22863421 Query 153925 AGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972 ||||||| ||||| || ||||| || || |||||||| || ||||||| Sbjct 22863422 AGCATATTAGGAGGGATAAAGCCACTAGCAACATCTGTACTGCTCAGG 22863469 Score = 96.9 bits (106), Expect = 4e-15 Identities = 193/290 (67%), Gaps = 21/290 (7%) Strand=Plus/Minus Query 171042 CAAGGTTTCCACAACATTACATTGAATCCATTTCACATGATGGGTGTTGCAGGAATACTA 171101 ||||| || || || |||| ||| |||||||| |||||||| || || || |||| Sbjct 25949506 CAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTG 25949447 Query 171102 GGTGGAGCATTATTATGTGCCATTCATGGTGCAACAGTGCAGAACACATTGTATGAAGAC 171161 || | || | |||| || ||||||||||| || || | || || || | |||||| Sbjct 25949446 GGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGAT 25949387 Query 171162 ACATCAGTTTATACTGATAATAAAATTCAAAGCACAACATTCCGTGCCTTTGATCCTACA 171221 | | || || |||| |||||||||| ||| | || || Sbjct 25949386 ------GGTGATGGTGCAAATA---------------CATTCCGTGCTTTTAACCCAACT 25949348 Query 171222 CAGGAAGAAGAAACTTACAGTATGATTACAGCAAACAGATTCTGGTCACAGATATTTGGT 171281 || | ||||||||||| ||| | || || ||| | || |||||||| || ||||| Sbjct 25949347 CAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGG 25949288 Query 171282 ATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTTATGTTGTTCGTTCC 171331 ||||||| || || ||| | | ||||| ||| ||||||| || || || Sbjct 25949287 GTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 Score = 91.5 bits (100), Expect = 2e-13 Identities = 123/170 (72%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 153260 TCTT-GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGG 153318 |||| ||||||||| |||||| || || ||||| |||||||||||||| ||||| | Sbjct 22862759 TCTTAGAGAATCCTGCTTGGTATACTCAGTATACTCCTTATCAAGCTGAGATCTCTCAAG 22862818 Query 153319 GAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAA 153378 |||| | || | || | |||| ||| ||| | || || || ||||| || ||||| | Sbjct 22862819 GAAGGCTTGAGTCGTTGCTTAATTTCCAGACGATGATTACTGATCTTACTGGTTTACCTA 22862878 Query 153379 TAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 | | || || || | ||||| |||| ||||| || || || || ||| Sbjct 22862879 TGTCTAATGCTTCGTTGTTAGACGAAGGTACTGCTGCGGCGGAGGCTATG 22862928 >seq6 Length=37079636 Score = 111 bits (122), Expect = 2e-19 Identities = 163/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 153746 TGATATTGCTGTAGGTAGTATGCAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCA 153805 |||||||| ||| ||| |||||||||||| | || ||||| ||||| ||||| || Sbjct 27007065 TGATATTGTTGTTGGTTCGGCTCAAAGGTTTGGTGTACCAATGGGTTATGGTGGTCCACA 27007006 Query 153806 TGCTGCATTCTTTGCAACAACAGACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG- 153864 |||||| || || || || || | |||||||||| | ||| ||||| || ||| | | Sbjct 27007005 TGCTGCCTTTTTAGCTACTTCACAAGAGTATAAGAGGATGATGCCTGGGAGGATTATTGG 27006946 Query 153865 -GTCAGTCAGTAGATAGTGAAGGTAATAAAGCATACAGATTAGCACTACAGACTAGAGAG 153923 || ||| || ||| | || || |||| | | | || | |||||||| || Sbjct 27006945 TGTTAGT--GTTGATTCTTCCGGGAAGCAAGCTTTGCGTATGGCTATGCAGACTAGGGAA 27006888 Query 153924 CAGCATATCAGGAGAGACAAAGCAACCAGTAACATCTGCACAGCTCAGG 153972 || ||||| | || || ||||| || || ||||||||||| ||||||| Sbjct 27006887 CAACATATACGCAGGGATAAAGCTACTAGCAACATCTGCACGGCTCAGG 27006839 Score = 95.1 bits (104), Expect = 1e-14 Identities = 120/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 ||||||||| |||||| || || ||||| |||||||||||||| ||||| ||| || Sbjct 27007544 GAGAATCCTGCTTGGTATACTCAGTATACTCCTTATCAAGCTGAGATTTCTCAAGGACGA 27007485 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | ||| || | | ||||| || ||| | || || || || || ||| | || || | Sbjct 27007484 CTTGAATCTCTGCTTAATTATCAGACGGTAATTACTGATCTCACTGGACTTCCTATGTCC 27007425 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 ||||| || | |||| |||| |||||| || ||||| || ||| Sbjct 27007424 AACGCGTCGTTGCTAGACGAAGGAACTGCTGCTGCAGAGGCGATG 27007380 Score = 93.3 bits (102), Expect = 5e-14 Identities = 149/210 (71%), Gaps = 3/210 (1%) Strand=Plus/Minus Query 169442 TTGGTTGGTTTGGTGTTCTAATGATTCCATGCTTACTCACAGCAGCAGCATGTTTCATCG 169501 |||| |||||||||||| | |||||||| |||| | || ||| | | ||| | Sbjct 27053882 TTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTAATA 27053823 Query 169502 TTGCATTCATTGCAGCACCTCCTGTCGATATCGACGGAATCAGAGAACCAGTAGCGGGTT 169561 | ||||||||||| | ||||| || ||||| || || || | ||| | || | || | Sbjct 27053822 TCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGAATCTGTTTCTGGAT 27053763 Query 169562 CT-TTCTTGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCTATC 169620 || ||||| ||||| ||||| || || || ||||| || |||| | ||| ||||| Sbjct 27053762 CTCTTCTT-TATGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCAGCAGCTAT- 27053705 Query 169621 GGACTACACTTCTACCCAATCTGGGAAGCA 169650 | | || || ||||| |||||||||||| Sbjct 27053704 TGTTTGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579011733516640