Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq20831 486 2e-132 seq3 464 7e-126 seq7 197 2e-45 seq6 104 3e-17 >seq20831 Length=3535 Score = 486 bits (538), Expect = 2e-132 Identities = 563/756 (74%), Gaps = 2/756 (0%) Strand=Plus/Minus Query 163812 AACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAGCAAC 163870 || || || || |||| ||||| || ||| ||||||||||||| || ||| | ||||| Sbjct 757 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAAC 699 Query 163871 CATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTCGTGA 163930 | ||| || |||| ||| | |||||||| || || || || |||||||||||||| Sbjct 698 TTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 639 Query 163931 ACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCCTC 163990 ||||||| | || || || | || || ||||| || || || ||||| || |||| | Sbjct 638 ACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTAC 579 Query 163991 GTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCCGCATCCCTTGATGAATG 164050 || || |||||| | || || ||||| || |||||||| |||||| |||||||||| Sbjct 578 TTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATG 519 Query 164051 GCTTTACAACGGTGGTCCTTTCCAACTTGTCGTCTTCCACTTCCTGATCGGTATCTATGC 164110 ||| |||||||| ||||||| |||| | || | ||||| | | ||| | | Sbjct 518 GCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTG 459 Query 164111 ATACATGGGTCGTGAGTGGGAACTGTCTTACCGTCTTGGTATGCGTCCTTGGATTTGTGT 164170 || |||||||||||||||||||| || |||||| |||||||||||||||||| ||| Sbjct 458 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 399 Query 164171 TGCTTACTCTGCACCCGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 164230 ||| || || || || |||||||| ||| | || || ||| || | || || | ||||| Sbjct 398 TGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCA 339 Query 164231 AGGTTCGTTCTCTGACGCAATGCCCCTGGGCATCTCTGGCACCTTCAACTACATGTTGGT 164290 ||| || ||||| | ||||| || || |||||||| || ||||||| ||| | || Sbjct 338 AGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGT 279 Query 164291 GTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATGCTCGGCGTTGCTGGCGT 164350 ||||| || ||||||||||| || |||||||| || || ||| | || || ||||| || Sbjct 278 ATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGT 219 Query 164351 ATTTGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTTACTTCTTCGCTGGTTCG 164410 ||| ||||| || | || ||||| ||||| ||||| |||| |||||| || | | Sbjct 218 ATTCGGCGGCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAG 159 Query 164411 TGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAAC 164470 |||||||| |||| ||| || || | ||||||| || || |||||||||||||| Sbjct 158 GGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAAC 99 Query 164471 ATACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATT 164530 ||||||||||| || ||||| ||||| ||||| || ||||||||||||| ||| || Sbjct 98 TTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTT 39 Query 164531 CAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGC 164566 |||||| || ||||| || || |||||| | || || Sbjct 38 CAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 3 >seq3 Length=27950219 Score = 464 bits (514), Expect = 7e-126 Identities = 692/978 (71%), Gaps = 3/978 (0%) Strand=Plus/Minus Query 165230 TTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGC 165289 || |||||||| ||||||||||| || | || ||||| ||| ||| | ||| | || Sbjct 12152866 TTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGG 12152807 Query 165290 GGTTGGCTTACTGGGACTACTTTCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCC 165349 | |||| | || || | || || | || ||||||||||| || ||||| |||||| Sbjct 12152806 GATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCC 12152747 Query 165350 TATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGT 165409 ||| | || ||| || ||| || || || |||| ||||| || | | | | Sbjct 12152746 TATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCA 12152687 Query 165410 CATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGATCCAA 165469 |||||| | || | || ||||||| ||| || ||| | ||||| | ||| ||| Sbjct 12152686 CATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAA 12152627 Query 165470 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGTTTCATG 165529 | || || |||| ||||||||| || ||| |||| ||||| || |||| |||| ||| Sbjct 12152626 TTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATG 12152567 Query 165530 CTTCGTCAGTTTGAATTAGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTT 165588 | ||||| |||||| | || || || || | | || || || ||||| || || || Sbjct 12152566 TTACGTCAATTTGAACTTGCTCGATCCGTTCAAT-TGCGCCCTTATAATGCAATCGCATT 12152508 Query 165589 CTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAG 165648 ||||||||| ||||||||||||||| ||| | || || || || ||||||||||| | Sbjct 12152507 CTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGG 12152448 Query 165649 TTGGTTTTTCGCTCCATCTTTCGGGGTCGCAGCAATCTTCAGGTTCCTTCTCTTCCTACA 165708 |||||| || || || ||| || || || || || || | ||| | || || | || Sbjct 12152447 TTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTT-TCCA 12152389 Query 165709 AGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTGGG 165768 ||| || ||||| |||| ||||| || |||||||||||||| || | ||| | || || Sbjct 12152388 AGGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCGG 12152329 Query 165769 TGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGG 165828 | || |||| | || || ||||||| ||| ||||| |||||| | | | ||||||| Sbjct 12152328 CGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGG 12152269 Query 165829 TGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCAAT 165888 ||| | ||||||||| ||| || ||| || | ||||||| |||||||| || ||||| Sbjct 12152268 TGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAAT 12152209 Query 165889 GGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTG 165948 ||| || || ||||| || ||||| | |||| || |||| ||| ||||| | || Sbjct 12152208 GGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTG 12152149 Query 165949 GTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTAT 166008 ||| ||||||| |||| | ||||| | || | ||| | |||| ||| | | || | Sbjct 12152148 GTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGT 12152089 Query 166009 TATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGAGCAGC 166068 | || || ||| | ||||| |||| |||||||| || ||||| || | | | ||||| Sbjct 12152088 AGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGC 12152029 Query 166069 AGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCG 166128 ||||| | | ||||| || ||| | || ||||| ||||| || || |||||| |||| Sbjct 12152028 GGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTCG 12151969 Query 166129 TGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCT 166188 ||||||| |||| | | ||| | || ||||| ||| || | |||| ||| || ||||| Sbjct 12151968 TGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCT 12151909 Query 166189 GCCTAGGGGTAACGCGCT 166206 || | || ||||| || Sbjct 12151908 ACCACGTGGAAACGCTCT 12151891 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 166084 TGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGTCTTCGTGCTTGGTTGGCACC 166143 ||| || ||||| || ||||| ||||| || || |||||| ||||||||||| |||| | Sbjct 27467488 TGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGC 27467547 Query 166144 AGTCGATCAACCGCATGAGAACTTTGTCTTCCCTGAAGAAGTTCTGCCTAGGGGTAACGC 166203 ||||| || ||||| ||| || | |||||||| || ||||| || | || ||||| Sbjct 27467548 TCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 27467607 Query 166204 GCT 166206 || Sbjct 27467608 TCT 27467610 >seq7 Length=29178675 Score = 197 bits (218), Expect = 2e-45 Identities = 205/269 (76%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 165707 CAAGGATTCCATAACTGGACCTTGAATCCCTTTCATATGATGGGTGTTGCAGGTATCCTG 165766 ||||| || ||||| ||||| | ||| || |||||||||||||| || || ||| | ||| Sbjct 25949506 CAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTG 25949447 Query 165767 GGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAATACTCTGTATCAAGAT 165826 || | || |||| | || || ||||||| ||| ||||| |||||| | | | ||||| Sbjct 25949446 GGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGAT 25949387 Query 165827 GGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTACTCA 165886 ||||| | ||||||||| ||| || ||| || | ||||||| |||||||| || ||| Sbjct 25949386 GGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCA 25949327 Query 165887 ATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGG 165946 ||||| || || ||||| || ||||| || ||||| || |||| ||| ||||| | Sbjct 25949326 ATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGT 25949267 Query 165947 TGGTTGCATTTCTTTATGCTGTTTGTTCC 165975 ||||| |||||||||||| | ||||| || Sbjct 25949266 TGGTTACATTTCTTTATGTTATTTGTACC 25949238 Score = 87.8 bits (96), Expect = 2e-12 Identities = 242/371 (65%), Gaps = 19/371 (5%) Strand=Plus/Plus Query 165824 GATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTAC 165883 |||||||| | ||||||||| ||| || ||| |||| |||||| | | |||| || Sbjct 20870571 GATGGTGATGGTGCAAATACATTCCGTGCTTTTAACTCAACTCAAACTGGAAAAACTTAT 20870630 Query 165884 TCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAG 165943 | |||| | | || ||||| || ||||| || || | || |||| ||| || Sbjct 20870631 TGAATGCTCAACGCTAACCGCTTTTGGTCACAAATATCTGGGGTTGCTTTTTCCGGTATA 20870690 Query 165944 AGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATC 166003 | ||||| ||||| ||||| | ||| | | || || ||| | | | ||| | | Sbjct 20870691 CGTTGGTTACATTT-TTTATTTTATTTCTACTAGTAATTGGTTTATAAATGAGTACTCTT 20870749 Query 166004 GGTATTATTGGTCTTGCTCTCAACCTTC------GTGCTTATGACTTTGTATCCCAAGAG 166057 | | | || || ||| | ||||| | |||| |||||||| || ||| | || Sbjct 20870750 AGAGTAGTCGGCCTAGCTTTGAACCTACTGGGCAGTGCCTATGACTTCGTTTCC-ATGAA 20870808 Query 166058 ATCAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAAT 166117 | | ||||| ||||| || | ||||| | ||||| || | || || Sbjct 20870809 TTTTGTGCAGCGGAAGATCC-----------CTTTCTATAATAAAAATATCTTTTTAAAC 20870857 Query 166118 GAAGGTCTTCGTGCTTGGTTGGCACCAGTCGATCAACCGCATGAGAACTTTGTCTTCCCT 166177 ||||| ||||||||||| |||| | |||||||| |||||||| || | ||| | Sbjct 20870858 GAAGGCATTCGTGCTTGGATGGCGGCTCAAGATCAACCTTATGAGAACCTTATATTCTTT 20870917 Query 166178 GAAGAAGTTCT 166188 || |||||||| Sbjct 20870918 GAGGAAGTTCT 20870928 >seq6 Length=37079636 Score = 104 bits (114), Expect = 3e-17 Identities = 161/226 (71%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 163808 AAACAACCGCCTCTATGTTGGTTGGTTCGGCGTTCTGATGATCCCTACGCTGCTTG-CAG 163866 ||| || || || || |||| ||||| || ||| ||||||| ||||| || ||| | | Sbjct 27053899 AAAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTAC-CTTATTGACCG 27053841 Query 163867 CAACCATCTGTTTCATCGTCGCCTTCGTCGCTGCTCCCCCTGTGGACATCGATGGTATTC 163926 |||| | ||| | |||| ||| | ||| |||| || || || || |||||||||| Sbjct 27053840 CAACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTC 27053781 Query 163927 GTGAACCTGTTGCAGGTTCGCTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTC 163986 ||||| ||||| | || || || | ||||| ||||| || || || ||||| || ||| Sbjct 27053780 GTGAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTC 27053721 Query 163987 CCTCGTCCAATGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGC 164032 | | || || ||| || | || || ||||| || |||||||| Sbjct 27053720 CTACTTCAGCAGCTATT-GTTTGCATTTTTACCCGATCTGGGAAGC 27053676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556731470517240