Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq20831 423 2e-113 seq6 98.7 1e-15 >seq20831 Length=3535 Score = 423 bits (468), Expect = 2e-113 Identities = 561/779 (72%), Gaps = 0/779 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | || | ||||| |||| ||||| ||||| || Sbjct 784 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 725 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 |||||||| ||||| || ||| | | ||| ||| | ||||| |||||||| || Sbjct 724 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 665 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || ||||| || || || | |||||||| | || |||| | || |||||||| Sbjct 664 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 605 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 || || |||||||| || |||| |||| || || ||| | || || ||||| || Sbjct 604 ATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATC 545 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 |||||||| || | | ||||| ||| |||| || || |||||||| | | | | Sbjct 544 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 485 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850 | ||||| || | || | || || |||||| | |||||||| | | | | Sbjct 484 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 425 Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 || |||||| | |||||||| |||||| |||||||| || || | || ||| ||| Sbjct 424 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCT 365 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 || ||| | | |||||| ||||||| || ||| ||||||||||||||||||||||| Sbjct 364 GTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 305 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 ||||| || |||||||| ||| | |||||||| || |||||||||||||||||||| || Sbjct 304 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 245 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 || || ||| ||| ||||| ||| | ||||| || || |||| || ||||||||| Sbjct 244 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATGGT 185 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 || | ||||| ||| | | ||||| || || || || | |||||| || | ||| Sbjct 184 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 125 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 |||| ||||| |||||||||||||| || || ||||| || || ||||| || || || Sbjct 124 TACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGC 65 Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| |||||||| ||||| ||||||||||| || | | | || |||||| |||| Sbjct 64 CGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 6 >seq6 Length=37079636 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/216 (70%), Gaps = 1/216 (0%) Strand=Plus/Minus Query 168524 CTTTATGTTGGTTGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGCATGT 168583 ||||| |||| ||||| ||||| || ||||| || ||||| || ||| | | | Sbjct 27053889 CTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACTTCCGTT 27053830 Query 168584 TTCATTGTTGCATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTA 168643 || | | | ||||| |||||| | || || || ||||| || || || | ||| |||| Sbjct 27053829 TTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGAATCTGTT 27053770 Query 168644 GCAGGTGCTCTAATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAAC 168703 | || |||| | ||||||||||| || || |||||||| || |||| ||||| Sbjct 27053769 TCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCAGCA 27053710 Query 168704 GCAATCGGTCTACACTTCTACCCAATTTGGGAAGCA 168739 || || || | || || ||||| || ||||||||| Sbjct 27053709 GCTAT-TGTTTGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564245661154080