Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq20831 376 3e-99 seq3 246 4e-60 seq7 107 2e-18 seq6 104 3e-17 >seq20831 Length=3535 Score = 376 bits (416), Expect = 3e-99 Identities = 553/780 (71%), Gaps = 2/780 (0%) Strand=Plus/Minus Query 171820 TTCTGCGAATGGGTAACCTCAACTAACAACAGAATTTATGTTGGTTGGTTCGGTGTACTC 171879 ||||| | ||| ||||| ||| | || | |||| |||| ||||| ||||| | Sbjct 784 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 725 Query 171880 ATGATCCCATGTTTGCTCACAGCAGCAGCATGCTTCATCGTTGCATTCATTGCAGCACCT 171939 |||||||| || | || ||| | | || || | ||||||||||| || ||| Sbjct 724 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCT 665 Query 171940 CCTGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACAA 171998 || || ||||| || || || | ||||| ||| | || ||| ||||| || || ||||| Sbjct 664 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACAA 606 Query 171999 CATCATCTCTGGTGCAGTTGTTCCATCATCAAACGCAATAGGTCTCCACTTCTACCCTAT 172058 || || || ||||| || |||| | || || || ||| | || || ||||| || Sbjct 605 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 546 Query 172059 CTGGGAAGCAGCAACCGTAGATGAATGGTTGTACAATGGTGGTCCTTATCAGTTGGTAAT 172118 ||||||||| ||| |||| ||||||||| | ||||| || ||||||||| | | | | Sbjct 545 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 486 Query 172119 CTTCCACTTCCTTATCGGTATCTCAGCATACATGGGAAGACAGTGGGAACTATCATACAG 172178 | ||||| | | ||| | | || ||||| | |||||||||| | | | Sbjct 485 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 426 Query 172179 ATTAGGTATGAGACCATGGATATGTGTAGCATATTCAGCACCTGTATCAGCAGCATTTGC 172238 | |||||| | || ||||| ||| ||||||||||| ||||| |||| ||| ||| Sbjct 425 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 366 Query 172239 TGTGTTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTAT 172298 ||| ||| | | || ||| | ||||| || || |||||||||||||| ||||| || Sbjct 365 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 306 Query 172299 CTCAGGTACGTTCAACTTTATGTTCGTGTTCCAAGCAGAGCATAACATTCTAATGCATCC 172358 ||| ||||| |||||||||||| | || ||||| || ||||| |||||||| ||||| || Sbjct 305 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 246 Query 172359 TTTCCACATGGCAGGAGTAGCAGGAATGTTTGGAGGATCTTTATTCTCAGCAATGCACGG 172418 || |||||| ||| ||||| || | || || || || ||||| || ||||| || Sbjct 245 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATGG 186 Query 172419 TTCTTTAGTTACATCTTCTCTAATCAGAGAGACAACTGAAGCAGAATCACAGAACTACGG 172478 ||| || || || ||| | | ||||| || || || ||| ||||| || | || Sbjct 185 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 126 Query 172479 ATACAAGTTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGG 172538 |||| |||||||||||||||||||| |||||||| ||||| || || ||||| ||||| Sbjct 125 TTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 66 Query 172539 TCGTCTTATCTTCCAGTATGCTTCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 172598 || | |||||||| |||||| ||||||||| || | | | || |||||| |||| Sbjct 65 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 6 >seq3 Length=27950219 Score = 246 bits (272), Expect = 4e-60 Identities = 676/1038 (65%), Gaps = 22/1038 (2%) Strand=Plus/Minus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 |||||| || | || ||||||||| ||| | | || || || | || ||||||||| Sbjct 12152902 TTTGATATTATGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTGGT 12152843 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || | || | || | ||||||| ||| | ||||| Sbjct 12152842 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCTTT 12152783 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGAGCAAACTTTTTA 173130 || || ||||||||||| ||||| | || ||| ||| | ||||| || |||| | Sbjct 12152782 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTAA 12152723 Query 173131 ACAGCAGCAGTCTCCACACCTGGCGACGCAATGGGTCATAGTCTTCTGTTCCTTTGGGGA 173190 || || || | || || |||| | | | ||| | | |||| || ||||| Sbjct 12152722 ACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGT 12152663 Query 173191 CCTGAAGCACAAGGTTCATTCGTACGTTGGTTACAACTCGGAGGACTATGGAACTTTGTA 173250 | |||||||||| | || ||||||| ||| | || || || | | ||||| Sbjct 12152662 CTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTGTT 12152603 Query 173251 GCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTCCGTCAGTTTGAGATCGCAGGA 173310 || | | || | |||| | | ||| |||| ||| | ||||| ||||| | || || Sbjct 12152602 GCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTCGA 12152543 Query 173311 CTTGTAGGCATCAGACCTTACAACGCACTCGCATTCTCTGCTGTTATCGCAGTCTTCACT 173370 || | | ||||| || ||| |||||||||||| | ||||| || || | Sbjct 12152542 TCCGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTTGTT 12152483 Query 173371 AGCATCTTTTTAATCTACCCACTAGGGCAGCACAGTTGGTTCTTCGCACCTTCATTCGGT 173430 || | |||| || ||||| || || |||||||||| || ||| || ||| Sbjct 12152482 TTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGGT 12152423 Query 173431 GTCGCAGCAATCTTTCGTTATATCTTATTCATACAAGGTTTCCACAACATTACATTGAAT 173490 || || || || ||||| | ||| | || | ||||| || || || | |||||| Sbjct 12152422 GTAGCGGCTATATTTCGATTCATCCT-TTTTTCCAAGGGTTTCATAATTGGATATTGAAC 12152364 Query 173491 CCATTTCACATGATGGGTGTTGCAGGAATACTAGGTGGAGCATTACTATGTGCCATTCAT 173550 |||||||| |||||||| || | || |||| || | || | ||||| || |||||| Sbjct 12152363 CCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATTCAT 12152304 Query 173551 GGTGCAACAGTGCAGAACACATTGTATGAAGACACATCACAATATACTGAAGGTAAGATT 173610 ||||| || || | || || || | ||||| || ||| ||| Sbjct 12152303 GGTGCTACTGTAGAAAATACTTTATTTGAAG------------ATGGTGATGGT------ 12152262 Query 173611 CAATCCACAACTTTCAGAGCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATT 173670 | | || ||| | || ||| | || || || | |||||||||||| ||| | Sbjct 12152261 ---GCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTC 12152205 Query 173671 ACAGCGAACAGATTCTGGTCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTA 173730 || || ||| | || |||||| | | ||||| | || ||||| || ||| | | ||| Sbjct 12152204 ACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTA 12152145 Query 173731 CACTTCCTCATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTA 173790 || ||| ||||| || ||| | || | ||| | |||| | | || | || Sbjct 12152144 CATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTC 12152085 Query 173791 GGTCTTGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAA 173850 || || || | ||||| | || || ||||| || || || || | | ||||| ||| Sbjct 12152084 GGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAA 12152025 Query 173851 GATCCAGAGTTCGAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCA 173910 ||| | | || ||||||||| | ||||| ||||| ||| | || |||||||| | || Sbjct 12152024 GATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCT 12151965 Query 173911 TGGATGTCATCTGTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCA 173970 |||||| | || ||||| | || ||||| ||| | |||| | || || || ||||| Sbjct 12151964 TGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTACCA 12151905 Query 173971 AGAGGTAACGCACTTTAA 173988 | || ||||| |||||| Sbjct 12151904 CGTGGAAACGCTCTTTAA 12151887 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 173863 GAGACTTTCTACACTAAGAATATACTTCTTAATGAAGGTATGAGAGCATGGATGTCATCT 173922 ||||||||||| ||||| ||||| ||| | || |||||||| | || |||||| | || Sbjct 27467489 GAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCT 27467548 Query 173923 GTAGATCAACCACATGAGAACTTCGTATTTCCAGAAGAAGTGTTACCAAGAGGTAACGCA 173982 |||||| || ||||| ||| | |||| || || || || ||||| | || ||||| Sbjct 27467549 CAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCT 27467608 Query 173983 CTTTAA 173988 |||||| Sbjct 27467609 CTTTAA 27467614 >seq7 Length=29178675 Score = 107 bits (118), Expect = 2e-18 Identities = 148/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 |||||||||||| |||| ||||| || || |||||||||||||| || || || || || Sbjct 22863265 CAAAGGTTTGGTGTTCCGATGGGTTATGGTGGTCCTCATGCTGCGTTTTTGGCTACTTCA 22863324 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAG--GTCAGTCAGTAGATAGCGAAG 158560 | |||||||||||| ||| ||||| || ||| | | || ||| || ||| | | Sbjct 22863325 CAAGAGTATAAGAGAATGATGCCTGGGAGGATTATTGGTGTTAGT--GTTGATTCCTTTG 22863382 Query 158561 GTAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAG 158620 | || ||| | | | || | |||||||| || |||||||| || || || |||| Sbjct 22863383 GGAAGCCAGCTTTGCGTATGGCGATGCAGACTAGGGAACAGCATATTAGGAGGGATAAAG 22863442 Query 158621 CAACCAGTAACATCTGCACAGCACA 158645 | || || |||||||| || || || Sbjct 22863443 CCACTAGCAACATCTGTACTGCTCA 22863467 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/109 (79%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 159693 TGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGGAGGTGG 159752 ||| || ||||| || ||||| || | || ||||| ||||||||||| ||||||||||| Sbjct 22865266 TGGAGCGGATGTGTGCCATCTCAATCTCCACAAGACCTTCTGTATTCCTCATGGAGGTGG 22865325 Query 159753 AGGTCCTGGCGTAGGTCCTATTGGTGT--AGCAAAACATCTCACACCAT 159799 |||||||| | ||||| |||||||| ||| ||||| | |||||| Sbjct 22865326 TGGTCCTGGTATGGGTCCCATTGGTGTGAAGC--AACATTTGGCACCAT 22865372 Score = 82.4 bits (90), Expect = 9e-11 Identities = 121/170 (71%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 157935 TCTT-GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGG 157993 |||| ||||||||| |||||| || || ||||| |||||||||||||| ||||| | Sbjct 22862759 TCTTAGAGAATCCTGCTTGGTATACTCAGTATACTCCTTATCAAGCTGAGATCTCTCAAG 22862818 Query 157994 GAAGATTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGA 158053 |||| | || | || | |||| ||| ||| | || || || || || || |||| | Sbjct 22862819 GAAGGCTTGAGTCGTTGCTTAATTTCCAGACGATGATTACTGATCTTACTGGTTTACCTA 22862878 Query 158054 TAGCAAACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 | | || || || | ||||| |||| ||||| || || || || ||| Sbjct 22862879 TGTCTAATGCTTCGTTGTTAGACGAAGGTACTGCTGCGGCGGAGGCTATG 22862928 >seq6 Length=37079636 Score = 104 bits (114), Expect = 3e-17 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 ||||||||| |||||| || || ||||| |||||||||||||| ||||| ||| || Sbjct 27007544 GAGAATCCTGCTTGGTATACTCAGTATACTCCTTATCAAGCTGAGATTTCTCAAGGACGA 27007485 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | ||| || | | ||||| || ||| | || || || ||||| ||||| || || | Sbjct 27007484 CTTGAATCTCTGCTTAATTATCAGACGGTAATTACTGATCTCACTGGACTTCCTATGTCC 27007425 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 ||||| || | |||| |||| |||||| || ||||| || ||| Sbjct 27007424 AACGCGTCGTTGCTAGACGAAGGAACTGCTGCTGCAGAGGCGATG 27007380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587847065376560