Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq20831 423 2e-113 seq3 401 7e-107 seq7 192 7e-44 >seq20831 Length=3535 Score = 423 bits (468), Expect = 2e-113 Identities = 540/741 (73%), Gaps = 2/741 (0%) Strand=Plus/Minus Query 162427 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 162486 || ||||| || || ||||||| || || | ||| | ||||| | ||| || || Sbjct 742 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 683 Query 162487 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 162546 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 682 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 623 Query 162547 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 162606 || | || || ||||| || || || ||||| || |||| |||| || |||||| Sbjct 622 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 563 Query 162607 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 162666 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 562 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 503 Query 162667 CCTTTCCAACTCGTAGTATTCCACTTCCTGATCGGCATCTATGCCTACATGGGACGTGAA 162726 |||| |||| | || | ||||| | | || | | || ||||| ||||| Sbjct 502 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 443 Query 162727 TGGGAACTCTCTTACCGTCTTGGTATGCGTCCATGGATCTGC-GTAGCATACTCTGCACC 162785 |||||||| || |||||| ||||||||||| ||||| ||| || ||||| || || || Sbjct 442 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCC 384 Query 162786 TGTTGCAGCAGCATCGGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGA 162845 ||||||||| ||| | || || ||| || | || || | |||||||| ||| ||||| Sbjct 383 TGTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGA 324 Query 162846 CGCAATGCCCTTGGGTATCAGTGGTACATTCAACTACATGCTTGTCTTCCAAGCAGAGCA 162905 | ||||| | || ||| |||||| ||||||| ||| |||| ||||| || ||||| Sbjct 323 TGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCA 264 Query 162906 CAACATTCTGATGCATCCCTTCCACATGTTGGGTGTCGCAGGTGTCTTCGGTGGTTCACT 162965 ||||||||| ||||| || || |||||||| ||||| || ||||| ||||| || || | Sbjct 263 CAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTT 204 Query 162966 GTTCAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTCCGTGAGACGACTGAAAC 163025 || ||||| ||||| ||||| ||||| || ||| | || | || || || |||| Sbjct 203 ATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAA 144 Query 163026 TGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGC 163085 ||| || || | ||||||| ||||| ||||||||||| || |||||||| || || Sbjct 143 TGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGC 84 Query 163086 AGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAACTCCCGTTC 163145 || |||||||| || || || ||||||||||||||||| |||||||| || ||||| Sbjct 83 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 24 Query 163146 CTTGCACTTCTTCCTTGCTGC 163166 || || |||||| | || || Sbjct 23 TTTACATTTCTTCTTAGCGGC 3 >seq3 Length=27950219 Score = 401 bits (444), Expect = 7e-107 Identities = 657/943 (70%), Gaps = 3/943 (0%) Strand=Plus/Minus Query 163621 TTTGATGTCCTGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGA 163680 |||||| | ||||||||||| | | | | | || || ||| | ||||||||||| Sbjct 12152902 TTTGATATTATGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTGGT 12152843 Query 163681 TTACTACTTCTTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTC 163740 || | || |||| ||| ||| | || | || | ||| | || ||| |||| || Sbjct 12152842 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCTTT 12152783 Query 163741 GTTACGTCGTGGTACACCCATGGACTGGCAACTTCCTATCTTGAGGGTGCTAATTTTCTC 163800 || || || ||||| || |||||| |||| | ||||||| | || ||| |||||| Sbjct 12152782 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTAA 12152723 Query 163801 ACAGCGGCTGTGTCAACGCCTGCTGACGCTATGGGTCATTCTCTTCTTCTT-CTCTGGGG 163859 || || || | || || |||||| | | | | |||||| || || || || ||||| Sbjct 12152722 ACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCT-TTGTTGTTACTGTGGGG 12152664 Query 163860 TCCTGAGGCTCAGGGCGATTTCGTCCGCTGGATCCAACTTGGGGGACTCTGGAATTTTGT 163919 || ||| || || | ||||| || ||| ||| | || || |||| | |||||| Sbjct 12152663 TCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTGT 12152604 Query 163920 GGCACTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGGCAATTTGAACTTGCTCG 163979 || ||| |||| || ||||| | || |||| ||| | || ||||||||||||||||| Sbjct 12152603 TGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTCG 12152544 Query 163980 CCTGATTGGAATCAGACCCTACAATGCGATTGCTTTCTCTGGTCCTATTGCTGTCTTCGT 164039 || | | | || || ||||| || || ||||||||||| || ||||| || || Sbjct 12152543 ATCCGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTTGT 12152484 Query 164040 TAGTGTCTTTCTCATCTACCCTCTGGGTCAATCAAGTTGGTTCTTCGCTCCATCTTTTGG 164099 | |||| | || || || || ||||||||||| |||||||||| || || |||||| Sbjct 12152483 TTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 12152424 Query 164100 AGTGGCAGCAATCTTCAGATTCCTCTTATTCCTTCAAGGATTTCATAACTGGACTTTGAA 164159 || || || || || ||||| || | || | ||||| |||||||| |||| ||||| Sbjct 12152423 TGTAGCGGCTATATTTCGATTCATCCTTTTT-TCCAAGGGTTTCATAATTGGATATTGAA 12152365 Query 164160 CCCCTTCCATATGATGGGAGTTGCTGGTATACTAGGCGGAGCATTGCTATCTGCTATTCA 164219 ||| || |||||||||||||| | ||| |||| |||| || |||||| |||||||| Sbjct 12152364 CCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATTCA 12152305 Query 164220 CGGAGTCACAGTTGAAAATACATTGTATGAAGATGGAGAACAAGCAAACACCTTTAAGGC 164279 || | || || |||||||| || | ||||||||| || ||||| || || || Sbjct 12152304 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 12152245 Query 164280 GTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACTGCAAACCGCTTCTGGTC 164339 ||| | | || || | ||||| |||||||| |||||||| || |||||||| ||||| Sbjct 12152244 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 12152185 Query 164340 GCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGT 164399 | |||| || ||||| ||||| || || || ||| | ||||| | ||||| ||||| Sbjct 12152184 ATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATTTGT 12152125 Query 164400 GCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGCCTTGCTCTCAATCTTCG 164459 | || | ||| |||||| || |||| | | ||||| ||| | || || | Sbjct 12152124 ATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTATG 12152065 Query 164460 TGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGATCCTGAGTTCGAGACTTT 164519 ||| || || || || || || | | ||||| |||||| | | || |||||||| Sbjct 12152064 TGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGACTTT 12152005 Query 164520 CTATACCAAGAACATCTTATTGAACGAAGGACTCCGTGCATGG 164562 | |||| || || || | || |||||||| | ||||| ||| Sbjct 12152004 CAATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGG 12151962 >seq7 Length=29178675 Score = 192 bits (212), Expect = 7e-44 Identities = 204/269 (76%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 164134 CAAGGATTTCATAACTGGACTTTGAACCCCTTCCATATGATGGGAGTTGCTGGTATACTA 164193 ||||| |||||||| ||||| | |||||| || |||||||||||||| || ||| |||| Sbjct 25949506 CAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTG 25949447 Query 164194 GGCGGAGCATTGCTATCTGCTATTCACGGAGTCACAGTTGAAAATACATTGTATGAAGAT 164253 |||| || |||||| |||||||| || | || || |||||||| || | ||||||| Sbjct 25949446 GGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGAT 25949387 Query 164254 GGAGAACAAGCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCT 164313 || || ||||| || || || ||| | | || || | ||||| |||||||| Sbjct 25949386 GGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCA 25949327 Query 164314 ATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGG 164373 |||||||| || |||||||| ||||| || ||||| || ||||| ||||| || || || Sbjct 25949326 ATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGT 25949267 Query 164374 TGGCTTCATTTTTTCATGTTGTTTGTGCC 164402 ||| | ||||| || ||||| ||||| || Sbjct 25949266 TGGTTACATTTCTTTATGTTATTTGTACC 25949238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557390441684200