Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq20831 493 1e-134 seq3 473 1e-128 seq7 179 4e-40 seq6 114 1e-20 >seq20831 Length=3535 Score = 493 bits (546), Expect = 1e-134 Identities = 573/773 (74%), Gaps = 0/773 (0%) Strand=Plus/Minus Query 167097 TGGGTTACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCT 167156 ||| | ||||||||| | || ||||| || | || ||||| || ||| ||||||||||| Sbjct 775 TGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 716 Query 167157 ACGTTGCTTGCAGCAACCATCTGTTTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGAC 167216 || || | | ||||| | ||| || ||||| ||| | | ||||||||| || || Sbjct 715 ACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGAT 656 Query 167217 ATCGATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCT 167276 || |||||||| || ||||| ||| |||| || || | || || ||||| || || || Sbjct 655 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCA 596 Query 167277 GGTGCAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCA 167336 ||||| || ||||| ||||| ||||||||| | || || || || ||||||||||| Sbjct 595 GGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCT 536 Query 167337 GCAACCCTCGACGAGTGGTTGTACAATGGTGGTCCTTTCCAACTCGTAGTTTTCCACTTC 167396 ||| || | || || ||| | ||||| || ||||||| |||| | ||| | ||||| Sbjct 535 GCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTT 476 Query 167397 CTGATTGGCATCTATGCCTATATGGGTCGTGAGTGGGAACTCTCTTACCGTCTCGGTATG 167456 | |||| | | ||||||||||||||||||||||| || |||||| |||||| Sbjct 475 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 416 Query 167457 CGTCCCTGGATCTGTGTTGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTC 167516 ||||| ||||| ||||||||| || ||||| || || || ||| ||||||| ||| | Sbjct 415 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTG 356 Query 167517 GTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCGATGCCTCTTGGTATCTCTGGTACA 167576 | || || | |||||||| ||| ||||| | |||||||| || ||||||||||| Sbjct 355 ATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 296 Query 167577 TTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATCCTGATGCACCCCTTCCATATG 167636 ||||||| ||| |||| ||||| || ||||||||||| || |||||||| || || ||| Sbjct 295 TTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATG 236 Query 167637 CTCGGCGTTGCTGGCGTATTCGGCGGTTCTCTGTTCAGTGCAATGCACGGTTCTCTGGTT 167696 | || || ||||| ||||||||||| || | || ||||| ||||| ||||| |||| Sbjct 235 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTA 176 Query 167697 ACCTCTTCGCTGGTTCGTGAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTC 167756 || ||| || | | |||||||| |||| ||| || || | ||||||| ||| Sbjct 175 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 116 Query 167757 GGTCAGGAAGAAGAGACGTATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATC 167816 || || |||||||| || || ||||| || |||||||||||||| || || || ||||| Sbjct 115 GGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 56 Query 167817 TTCCAATACGCATCCTTCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGC 167869 |||||||| || |||||||| || || || | || |||||||| || || Sbjct 55 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 3 >seq3 Length=27950219 Score = 473 bits (524), Expect = 1e-128 Identities = 694/978 (71%), Gaps = 3/978 (0%) Strand=Plus/Minus Query 168519 TTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGC 168578 || |||||||| ||||||||||| || | || ||||| ||| ||| | ||| | || Sbjct 12152866 TTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGG 12152807 Query 168579 GGTTGGCTTACTGGGACTGCTTTCGTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCC 168638 | |||| | || || | | || || || ||||||||||| || ||||| |||||| Sbjct 12152806 GATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCC 12152747 Query 168639 TATCTGGAGGGCGCAAACTTTCTTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGT 168698 ||| | || || || ||| || || || || ||||| || || | | | Sbjct 12152746 TATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCA 12152687 Query 168699 CATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCACAAGGGGATTTCGTCAGATGGTGTCAA 168758 |||||| | || | || ||||||| ||| |||||| | ||||| | ||||||||| Sbjct 12152686 CATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAA 12152627 Query 168759 CTTGGAGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATG 168818 | || || |||| ||||||||| || ||| |||| ||||| || |||| |||| ||| Sbjct 12152626 TTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATG 12152567 Query 168819 CTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTT 168877 | ||||| |||||||| || || || || | | || || || ||||| || || || Sbjct 12152566 TTACGTCAATTTGAACTTGCTCGATCCGTTCAAT-TGCGCCCTTATAATGCAATCGCATT 12152508 Query 168878 CTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAG 168937 ||||||||| ||||||||||||||| ||| | || || || || ||||||||||| | Sbjct 12152507 CTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGG 12152448 Query 168938 TTGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTTCTCTTCCTACA 168997 |||||| || || || ||| || || | || || || |||||| | || || | || Sbjct 12152447 TTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTT-TCCA 12152389 Query 168998 AGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTGGG 169057 ||| || ||||| |||| | |||| ||||||||||||||||| || | ||| | | || Sbjct 12152388 AGGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCGG 12152329 Query 169058 AGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGATGG 169117 | || |||| | || |||||||||| ||| ||||| |||||| | | | ||||||| Sbjct 12152328 CGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGG 12152269 Query 169118 TGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAAT 169177 ||| |||||||| ||| || ||| || ||||| | || || || |||||||| Sbjct 12152268 TGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAAT 12152209 Query 169178 GGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTG 169237 ||| || || ||||| || ||||| | ||||||| |||| || ||||| | || Sbjct 12152208 GGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTG 12152149 Query 169238 GTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTAT 169297 ||| ||||||| |||| | ||||| | || | ||| | |||| ||| | | || | Sbjct 12152148 GTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGT 12152089 Query 169298 TATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGC 169357 | || || ||| | ||||| |||| |||||||| |||||||| || | | | ||||| Sbjct 12152088 AGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGC 12152029 Query 169358 AGAAGATCCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCG 169417 |||||| | | |||||||| ||| | || || || || || || ||||||||| |||| Sbjct 12152028 GGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTCG 12151969 Query 169418 TGCATGGTTAGCACCTATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACT 169477 ||| ||| | || || | ||| | |||||||| ||| || | |||| |||||| || || Sbjct 12151968 TGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCT 12151909 Query 169478 TCCCCGAGGTAATGCCCT 169495 || || || || || || Sbjct 12151908 ACCACGTGGAAACGCTCT 12151891 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 169373 TGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGTCTTCGTGCATGGTTAGCACC 169432 |||||| ||||| || || || || || || ||||||||| ||||||| ||| | || | Sbjct 27467488 TGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGC 27467547 Query 169433 TATTGATCAACCTCATGAGAACTTTGTGTTCCCTGAGGAAGTACTTCCCCGAGGTAATGC 169492 | ||||| |||||||| ||| || | ||||||||||| || || || || || || || Sbjct 27467548 TCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 27467607 Query 169493 CCT 169495 || Sbjct 27467608 TCT 27467610 >seq7 Length=29178675 Score = 179 bits (198), Expect = 4e-40 Identities = 201/269 (75%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 168996 CAAGGATTCCATAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATTTTG 169055 ||||| || ||||| |||||| ||| ||||||||||||||||| || || ||| | || Sbjct 25949506 CAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTG 25949447 Query 169056 GGAGGAGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTCTGTATCAAGAT 169115 || | || |||| | || |||||||||| ||| ||||| |||||| | | | ||||| Sbjct 25949446 GGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGAT 25949387 Query 169116 GGTGAACAAGCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCA 169175 ||||| |||||||| ||| || ||| || ||||| | || || || |||||| Sbjct 25949386 GGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCA 25949327 Query 169176 ATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGG 169235 ||||| || || ||||| || ||||| || |||||||| |||| || ||||| | Sbjct 25949326 ATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGT 25949267 Query 169236 TGGTTGCATTTCTTTATGCTGTTTGTTCC 169264 ||||| |||||||||||| | ||||| || Sbjct 25949266 TGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq6 Length=37079636 Score = 114 bits (126), Expect = 1e-20 Identities = 161/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Minus Query 167112 AACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTGCTTGCAGCA 167171 || || ||||| || | || ||||| || ||| ||||||| ||||| || | | ||| Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCA 27053839 Query 167172 ACCATCTGTTTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCGATGGTATCCGC 167231 || | ||| | ||||| ||| | | | ||||||| || || || |||||||| || Sbjct 27053838 ACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGT 27053779 Query 167232 GAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCT 167291 ||| | ||| |||| || || | ||||| ||||| || || || ||||| || ||||| Sbjct 27053778 GAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCT 27053719 Query 167292 TCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCA 167336 |||| ||||||| | | || || || || |||||||||||| Sbjct 27053718 ACTTCAGCAGCTATTGTT-TGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560413391940400