Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq20831 425 8e-114 seq6 96.9 5e-15 >seq20831 Length=3535 Score = 425 bits (470), Expect = 8e-114 Identities = 537/737 (73%), Gaps = 6/737 (1%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---C 215371 ||||| |||||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 763 ACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 704 Query 215372 GCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGA 215431 ||| || || || | | |||| ||||||| ||||| ||||| || ||||| || || Sbjct 703 GCAACTTCCGTTTTTATTATCG---CATTCATTGCTGCTCCTCCAGTAGATATTGATGGT 647 Query 215432 ATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 215491 || | || || ||| |||| ||| | | || || ||||| || || || ||||| || Sbjct 646 ATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATT 587 Query 215492 GTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTT 215551 | |||| ||| || || || || || || ||||| ||||||||||| ||| | ||| Sbjct 586 ATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTT 527 Query 215552 GACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGT 215611 || |||||||| ||||| || || |||| |||| || | | ||||| | ||||| Sbjct 526 GATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGT 467 Query 215612 ATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGG 215671 | || || || | ||||||||||| || | | | |||||| | |||||| Sbjct 466 GTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGG 407 Query 215672 ATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCA 215731 || |||||| || || || ||||| | ||||| ||| || ||| | | || ||| Sbjct 406 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCA 347 Query 215732 TTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTAC 215791 | ||||| || ||| ||||||| |||||| || ||||||||||| || ||||||| Sbjct 346 ATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTT 287 Query 215792 ATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTG 215851 ||| |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 286 ATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTA 227 Query 215852 GCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCT 215911 |||||||| ||||| || || || || ||| ||||| ||||| | || || ||| | Sbjct 226 GCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGT 167 Query 215912 CTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAG 215971 | ||||| || || || || | |||||| || | ||||||| ||||||||||| Sbjct 166 TTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAA 107 Query 215972 GAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATAC 216031 || ||||| |||||||| |||||||| || ||||| ||||| || | ||||||||||| Sbjct 106 GAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATAT 47 Query 216032 GCATCTTTCAACAACTC 216048 || ||||||||| || Sbjct 46 GCTAGTTTCAACAATTC 30 >seq6 Length=37079636 Score = 96.9 bits (106), Expect = 5e-15 Identities = 159/225 (71%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 215321 AATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCT---CGCAGCT 215377 |||||| | ||| |||| ||||||||||| | ||||||||| | | | |||| || Sbjct 27053895 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACT 27053836 Query 215378 ACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGA 215437 | | | ||| || | |||||||| ||| | ||||| || ||||| || || || | Sbjct 27053835 TC--CGTTTTTAAT-ATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGT 27053779 Query 215438 GAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCT 215497 || | ||| |||| ||| | | ||||| ||||| || || || ||||| || | ||| Sbjct 27053778 GAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCT 27053719 Query 215498 AGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCA 215542 | |||| || || | || || || ||||| |||||||||||| Sbjct 27053718 ACTTCAGCAGCTAT-TGTTTGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744822954236080