Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq3 486 2e-132 seq20831 448 6e-121 seq7 203 4e-47 seq6 93.3 5e-14 >seq3 Length=27950219 Score = 486 bits (538), Expect = 2e-132 Identities = 702/987 (71%), Gaps = 5/987 (1%) Strand=Plus/Minus Query 183215 GCTTTGTCTTTGTGGGCTGGTCTGGACTCCTACTTCTTCCCACTGCTTATCTTGCCATTG 183274 ||||||| ||||| || |||||||| || | || |||| ||| ||| | || | | Sbjct 12152868 GCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAG 12152809 Query 183275 GCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTATACCCATGGACTTGCTTCTT 183334 | | |||| | || || || | ||||| || |||||||| |||||| | ||| || Sbjct 12152808 GGGATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTT 12152749 Query 183335 CCTATCTTGAAGGTGCTAACTTTCTTACGGCAGCTGTCTCGACGCCTGCTGACGCTATGG 183394 ||||| | |||||| || ||| || || || | ||||| |||||| | | | | Sbjct 12152748 CCTATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAG 12152689 Query 183395 GTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTCTCAAGGGGACTTTCAACGCTGGTGCC 183454 |||||| | ||||||| ||||||| ||| | ||| | || ||| || ||||| | Sbjct 12152688 CACATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTC 12152629 Query 183455 AACTTGGGGGACTCTGGAATTTTGTGGCACTCCACGGTGCCTTTGCTCTCATTGGTTTCA 183514 || | || || |||| | |||||| || ||| |||| || ||||| | || |||| | Sbjct 12152628 AATTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTA 12152569 Query 183515 TGCTTCGACAGTTTGAACTTGCTCGCTTGATTGGTATCCGTCCTTACAATGCTATTGCGT 183574 || | || || |||||||||||||| | || | || ||||| ||||| || || | Sbjct 12152568 TGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCGCAT 12152509 Query 183575 TCTCTGGTCCTATTGCTGTTTTTGTCAGTGTATTCCTTATCTATCCACTGGGTCAGTCTT 183634 |||||||||| || ||||||||||| ||| |||| || |||||||||||||| ||| Sbjct 12152508 TCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTG 12152449 Query 183635 CATGGTTCTTTGCACCTAGTTTCGGGGTAGCAGCAATCTTTAGATTCCTATTGTTCCTTC 183694 ||||||||||| |||||||| || ||||| || || ||| ||||| | | || ||| Sbjct 12152448 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTT--TTC 12152391 Query 183695 --AGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCTGGTATACT 183752 |||||||| | || |||| || ||||| || |||||||||||||| | ||| |||| Sbjct 12152390 CAAGGGTTTC-ATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACT 12152332 Query 183753 AGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTGTATGAAGA 183812 || | || || || | ||||| ||||||| || ||||| ||||| || | |||||| Sbjct 12152331 CGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA 12152272 Query 183813 TGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTC 183872 ||| || ||||| |||||| || ||| | | ||||||| ||||| || ||||| Sbjct 12152271 TGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTC 12152212 Query 183873 TATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCG 183932 ||||| || || || || || |||||| || |||| |||||||| ||| |||||| || Sbjct 12152211 AATGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACG 12152152 Query 183933 TTGGTTGCACTTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGG 183992 |||||| || |||| |||||| ||||| | || | ||| | ||| | | || |||| Sbjct 12152151 TTGGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGG 12152092 Query 183993 CATCATTGGGCTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGC 184052 | | || || ||| | || || |||| ||||| || || || || | | | || Sbjct 12152091 AGTAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGC 12152032 Query 184053 AGCAGAAGATCCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAATGAAGGACT 184112 ||| |||||| | |||||||||| ||| | || || || || ||| | || ||||| | Sbjct 12152031 AGCGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTAT 12151972 Query 184113 ACGTGCATGGTTAGCACCTTCTGATCAACCACATGAGAATTTTATATTTCCAGAGGAGGT 184172 ||||| ||| | || || ||| | || ||||| || ||||||| | |||||||| Sbjct 12151971 TCGTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGT 12151912 Query 184173 ATTACCTAGAGGCAATGCTCTTTGATG 184199 |||| | || || ||||||| ||| Sbjct 12151911 TCTACCACGTGGAAACGCTCTTTAATG 12151885 >seq20831 Length=3535 Score = 448 bits (496), Expect = 6e-121 Identities = 556/758 (73%), Gaps = 6/758 (1%) Strand=Plus/Minus Query 181821 AATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCAACC 181880 |||||||| || | || ||||||||||| |||||||||| || | ||| | ||||| Sbjct 757 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 698 Query 181881 ATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGCGAA 181940 | ||| || | || ||| | || || ||||| || ||||| || ||||| || ||| Sbjct 697 TCCGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAA 638 Query 181941 CCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCATCC 182000 || || |||| || || | || || ||||| || || || ||||| || | || | Sbjct 637 CCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACT 578 Query 182001 TCCAACGCAATTGGTCTTCACTTCTACCCAATCTGGGAAGCTGCCTCACTTGATGAGTGG 182060 || || |||||| | || || ||||| |||||||||||||| || ||||||| ||| Sbjct 577 TCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGG 518 Query 182061 CTGTATAACGGTGGTCCTTTCCAACTGGTTGTTTTCCACTTCCTGATCGGCATCTACGCC 182120 || || ||||| ||||||| |||| ||||| | ||||| | | || | || || Sbjct 517 CTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGG--TGTA-GCT 461 Query 182121 T---ACATGGGACGTGAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCCTGGATCTGT 182177 | | ||||| ||||||||||||||| || ||| | ||||||||||| ||||| | Sbjct 460 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 401 Query 182178 GTAGCATACTCTGCTCCAGTCGCTGCAGCATCTGCTGTATTCTTAGTCTATCCTTTCGGT 182237 || ||||| || ||||| || || || ||| ||||||| ||||| | || || | ||| Sbjct 400 GTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGT 341 Query 182238 CAAGGTTCGTTCTCCGATGCAATGCCCCTCGGAATCTCAGGAACATTCAACTATATGTTG 182297 ||||| || || |||| ||||| || |||||||| || || ||||||| |||| | Sbjct 340 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 281 Query 182298 GTTTTCCAAGCTGAGCACAACATTCTTATGCATCCCTTCCACATGTTGGGTGTAGCAGGT 182357 || ||||| ||||||||||||||||||||||| || || |||||||| |||||||| ||| Sbjct 280 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 221 Query 182358 GTATTCGGTGGTTCACTGTTTAGTGCAATGCACGGTTCTTTGGTTACATCTTCACTCGTC 182417 |||||||| || || | |||||||| ||||| ||||| ||||| || ||| | || Sbjct 220 GTATTCGGCGGCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATC 161 Query 182418 CGTGAGACGACTGAGCAAGAGTCACAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAG 182477 | || || || || | || || || | ||||||| ||||| ||||||||||| Sbjct 160 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAA 101 Query 182478 ACCTATAACATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCA 182537 || || ||||| || || || ||||| || || || || |||||||||||||| || Sbjct 100 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 41 Query 182538 TTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGC 182575 |||||||| || ||||| || || |||||| | || || Sbjct 40 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 3 >seq7 Length=29178675 Score = 203 bits (224), Expect = 4e-47 Identities = 213/278 (77%), Gaps = 3/278 (1%) Strand=Plus/Minus Query 183687 GTTCCTTC--AGGGTTTCCACAACTGGACGTTAAACCCCTTCCATATGATGGGAGTTGCT 183744 |||| ||| |||||||| | || ||||| | ||||| || |||||||||||||| || Sbjct 25949514 GTTCTTTCCAAGGGTTTC-ATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCC 25949456 Query 183745 GGTATACTAGGAGGAGCACTACTCAGTGCTATCCATGGTGTCACAGTAGAGAATACATTG 183804 ||| |||| || | || || || | ||||| ||||||| || ||||| ||||| || Sbjct 25949455 GGTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTA 25949396 Query 183805 TATGAAGATGGAGAACAAGCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAG 183864 | ||||||||| || ||||| |||||| || ||| | | ||||||| ||||| Sbjct 25949395 TTTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAA 25949336 Query 183865 ACGTATTCTATGGTTACAGCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGC 183924 || ||||| ||||| || || || || || |||||||||||||| |||||||| ||| | Sbjct 25949335 ACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCC 25949276 Query 183925 AATAAGCGTTGGTTGCACTTCTTTATGTTGTTTGTTCC 183962 ||||| |||||||| || ||||||||||| ||||| || Sbjct 25949275 AATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq6 Length=37079636 Score = 93.3 bits (102), Expect = 5e-14 Identities = 158/225 (70%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 181818 AACAATCGTCTCTATGTCGGTTGGTTTGGTGTGCTGATGATCCCAACTCTGTTGGCGGCA 181877 || |||||||| || | || ||||||||||| ||||||| || || | ||| | ||| Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCA 27053839 Query 181878 ACCATCTGTTTCATCGTTGCTTTCGTAGCAGCACCTCCTGTCGATATCGACGGTATCCGC 181937 || | ||| | | || ||| | || | ||||| || ||||| || ||||| || Sbjct 27053838 ACTTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGT 27053779 Query 181938 GAACCCGTAGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCA 181997 ||| | || |||| || || | ||||| ||||| || || || ||||| || | || Sbjct 27053778 GAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCC- 27053720 Query 181998 TCCTCCAAC-GCAATTGGTCTTCACTTCTACCCAATCTGGGAAGC 182041 | || || | || ||| || | || || ||||| ||||||||||| Sbjct 27053719 TACTTCAGCAGCTATT-GTTTGCATTTTTACCCGATCTGGGAAGC 27053676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611483657379800