Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq3 477 1e-129 seq20831 457 1e-123 seq7 188 8e-43 seq6 93.3 5e-14 >seq3 Length=27950219 Score = 477 bits (528), Expect = 1e-129 Identities = 695/981 (71%), Gaps = 1/981 (0%) Strand=Plus/Minus Query 166197 TTCGTTTTTGTTGGTTGGTCTGGACTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGC 166256 || |||||||| ||||||||||| || | || |||| ||| ||| | ||| | || Sbjct 12152866 TTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGG 12152807 Query 166257 GGTTGGCTCACTGGGACTACTTTCGTCACGAGTTGGTATACTCATGGACTCGCAAGCAGT 166316 | |||| |||| || | || || || || ||||||||||||||| | || || Sbjct 12152806 GATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCC 12152747 Query 166317 TATCTGGAGGGTGCAAACTTTCTTACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGT 166376 ||| | || ||| || ||| || || || |||| ||||| || || | | | Sbjct 12152746 TATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCA 12152687 Query 166377 CATTCTCTACTTCTTCTCTGGGGTCCTGAGGCTCAAGGGGATTTCGTCAGGTGGTGCCAA 166436 |||||| | | | || ||||||| ||| || ||| | ||||| | ||||| ||| Sbjct 12152686 CATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAA 12152627 Query 166437 CTTGGAGGGCTTTGGGCCTTTGTTGCTCTCCACGGTGCTTTTGCCCTAATTGGTTTCATG 166496 | || || || | ||| |||||||||||| |||| |||||||| |||| |||| ||| Sbjct 12152626 TTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATG 12152567 Query 166497 CTTCGGCAGTTTGAAATCGCTCGTCTAGTAGGTATTCGTCCGTACAATGCAATCGCTTTT 166556 | || || |||||| | ||||| || | || || || ||||||||||| || Sbjct 12152566 TTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCGCATTC 12152507 Query 166557 TCTGGTCCTATTGCTGTCTTCGTTAGTGTCTTTCTCATCTACCCTCTGGGTCAATCGAGT 166616 |||||||| || ||||| || ||| |||| | || || || || ||||||||||| || Sbjct 12152506 TCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGT 12152447 Query 166617 TGGTTTTTCGCTCCATCTTTCGGGGTCTCAGCAATCTTCCGATTCCTCCTTTTCCTTCAA 166676 ||||| || || || ||| || || | || || || |||||| ||||||| | ||| Sbjct 12152446 TGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTT-TCCAA 12152388 Query 166677 GGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTCGGT 166736 || || || || |||| | |||||||||||||||||||||| || | ||| | ||||| Sbjct 12152387 GGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGC 12152328 Query 166737 GGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGATGGT 166796 | || |||| | || || ||||||| ||| ||||| || ||| | | | |||||||| Sbjct 12152327 GCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGT 12152268 Query 166797 GAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATG 166856 || |||||||| ||| || || || | ||||||| |||||||| ||||||||| Sbjct 12152267 GATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATG 12152208 Query 166857 GTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGG 166916 || || || ||||||| |||||| | |||| || |||| ||| ||||| | ||| Sbjct 12152207 GTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGG 12152148 Query 166917 TTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATT 166976 || ||||||| |||| | ||||| | || | ||| | |||| ||| | | || | Sbjct 12152147 TTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTA 12152088 Query 166977 ATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCA 167036 | || || ||| | ||||| |||| |||||||| |||||||| ||| | ||||| Sbjct 12152087 GTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCG 12152028 Query 167037 GAGGATCCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAATGAGGGTATGCGT 167096 || ||| | | ||||| || ||| |||| || || ||||| || || || ||||| ||| Sbjct 12152027 GAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTCGT 12151968 Query 167097 TCTTGGATGGCAACTATCGATCAACCTCATGAGAGTTTCGTATTCCCTGAAGAGGTTCTT 167156 |||||||||| || | ||| | |||||||| | | |||||| ||| |||||||| Sbjct 12151967 GCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTA 12151908 Query 167157 CCTAGAGGTAACGCTCTCTAA 167177 || | || |||||||| ||| Sbjct 12151907 CCACGTGGAAACGCTCTTTAA 12151887 >seq20831 Length=3535 Score = 457 bits (506), Expect = 1e-123 Identities = 557/758 (73%), Gaps = 6/758 (1%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCC---CTGTTTGCTCGCCGCT 164847 || |||||||| | || ||||| |||||| | |||||||| || ||| ||| || Sbjct 757 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 698 Query 164848 ACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGT 164907 | ||| |||||| |||||||| |||||||| || || || ||||||||||||||| Sbjct 697 TCCGTTT---TTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 641 Query 164908 GAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCG 164967 |||||||| | || ||||| | ||||| ||||| || || || ||||| | |||| Sbjct 640 GAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCT 581 Query 164968 TCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAA 165027 ||||| || || || | || || || || || |||||||||||| || | |||||| Sbjct 580 ACTTCTGCAGCTATTGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAA 521 Query 165028 TGGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCT 165087 ||| | |||||||| |||||||| | | |||| | ||||| | | ||||||||| Sbjct 520 TGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCT 461 Query 165088 TGCTACATGGGTCGTGAGTGGGAACTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGC 165147 || || |||||||||||||||||||| || ||| || |||||||||||||||||| Sbjct 460 TGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCT 401 Query 165148 GTAGCATATAGCGCACCTGTCGCTGCTGCTGCCGCAGTTTTCCTGGTCTATCCTTTCGGT 165207 || |||||| || ||||| || ||||| | || |||||| || | || || | ||| Sbjct 400 GTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGT 341 Query 165208 CAAGGGAGTTTCTCTGATGGTATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTC 165267 ||||| ||||| ||||||||||||||||| || |||||||||||||| |||| |||| | Sbjct 340 CAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 281 Query 165268 GTCTTCCAAGCAGAACATAACATTCTTATGCATCCGTTCCACATGCTCGGCGTTGCTGGG 165327 || ||||| || || || |||||||||||||| || || |||||| | || || ||||| Sbjct 280 GTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGT 221 Query 165328 GTATTCGGTGGATCTCTTTTCTCTGCTATGCATGGAAGTCTTGTTACTTCCTCACTCGTC 165387 |||||||| || || | || |||||||||||| | || ||||| | || Sbjct 220 GTATTCGGCGGCTCCTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATC 161 Query 165388 CGCGAGACAACTGAAACAGAGAGTCAGAACTACGGTTATAAGTTTGGACAAGAAGAAGAG 165447 | || || || |||| || | || | ||||| | || |||||||||||||| Sbjct 160 AGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAA 101 Query 165448 ACCTATAACATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCC 165507 || || ||||| || ||||| || || || || || || | || |||||||| || Sbjct 100 ACTTACAACATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGT 41 Query 165508 TTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGC 165545 ||||||||||| ||||| | || |||||| | || || Sbjct 40 TTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGC 3 >seq7 Length=29178675 Score = 188 bits (208), Expect = 8e-43 Identities = 203/269 (75%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 166674 CAAGGATTCCACAACTGGACACTGAACCCATTTCATATGATGGGTGTAGCAGGTATTCTC 166733 ||||| || || || |||||| ||||||||||||||||||||| || || ||| | || Sbjct 25949506 CAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTG 25949447 Query 166734 GGTGGTGCATTGCTTTCTGCCATCCATGGTGTTACAGTAGAGAACACTCTGTATCAAGAT 166793 || | || |||| | || || ||||||| ||| ||||| || ||| | | | ||||| Sbjct 25949446 GGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGAT 25949387 Query 166794 GGTGAACAGGCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCA 166853 ||||| |||||||| ||| || || || | ||||||| |||||||| |||||| Sbjct 25949386 GGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCA 25949327 Query 166854 ATGGTTACAGCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGG 166913 ||||| || || ||||||| |||||| || ||||| || |||| ||| ||||| | Sbjct 25949326 ATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGT 25949267 Query 166914 TGGTTGCATTTCTTTATGCTGTTTGTTCC 166942 ||||| |||||||||||| | ||||| || Sbjct 25949266 TGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq6 Length=37079636 Score = 93.3 bits (102), Expect = 5e-14 Identities = 125/173 (72%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 164788 AATAACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCC---CTGTTTGCTCGCC 164844 || || |||||||| | || ||||| |||||| | ||||| || || ||| ||| Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCA 27053839 Query 164845 GCTACAATTTGTTTTATTACTGCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATT 164904 || | ||| ||| || |||||||| ||| |||| || || || |||||||||||| Sbjct 27053838 ACTTCCGTTT---TTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATT 27053782 Query 164905 CGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGC 164957 |||||| |||| | || ||||| | || || ||||| || || || ||||| Sbjct 27053781 CGTGAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGC 27053729 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563465132199040