Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6 123 2e-23 seq4 107 1e-18 seq1 93.3 3e-14 seq5 89.7 3e-13 >seq6 Length=37079636 Score = 123 bits (136), Expect = 2e-23 Identities = 143/193 (74%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| |||||||||||||| |||| ||| |||| |||| || || |||||||| ||||| Sbjct 33565275 TTCCTTCTGAATGTTATAATCCGCAAGCGTTCGACCATCCTCAAGTTGTTTTCCAGCAAA 33565216 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || |||| || ||||| | || | ||| |||||||| ||||||| |||||| Sbjct 33565215 GATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCTTGAATCTTCGCCTTGACGTT 33565156 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | || | || | |||||| || | ||| || ||||| || ||||| || ||||| Sbjct 33565155 GTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATAGTTTTACCAGTGAGGGTTTTCAC 33565096 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 33565095 AAAGATCTGCATA 33565083 Score = 93.3 bits (102), Expect = 3e-14 Identities = 149/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || || ||||||||||| ||||| | | | | || |||| Sbjct 19969775 CAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTCCGACCATC 19969834 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| ||||| ||||| || || || |||||||| | || | ||| || ||||| Sbjct 19969835 CTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATCCCTTCTTTGTC 19969894 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| |||||| | || | || | ||| || |||| ||| ||||| Sbjct 19969895 CTGGATCTTGGCCTTGACGTTGTCAATAGTGTCTGAGCTCTCGACCTCGAGGGTAATGGT 19969954 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || | ||||| || |||||||||||| Sbjct 19969955 CTTACCAGTCAAGGTCTTGACGAAGATCTGCATA 19969988 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/195 (72%), Gaps = 8/195 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||||||||| ||||||| | | || |||| || || |||||||| ||||| Sbjct 33565502 TCTTTCTGAATGTTGTAGTCCGCTAATGTCCGACCATCTTCGAGTTGTTTTCCCGCAAAG 33565443 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 ||||| | |||||||| | || | ||| ||||| || ||||||| ||| || || Sbjct 33565442 ATTAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTATCTTGAATCTTCGCTTTCAC--AT 33565385 Query 34911 GCTATCGAT--TCACCG-GC-CTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 | || || | ||| || || || || | ||||| || |||||||| | |||||| Sbjct 33565384 --TGTCAATTGTATCCGAGCTTTCGACCTCAAGAGTTATCGTCTTTCCCGTCAAAGTCTT 33565327 Query 34967 CACAAAGATCTGCAT 34981 ||||| |||||||| Sbjct 33565326 GACAAATATCTGCAT 33565312 Score = 89.7 bits (98), Expect = 3e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCAT 34830 |||||||| | || || ||||| ||||| ||||| | |||| | || |||| | Sbjct 19969551 ACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAG--TGCGACCATCCT 19969608 Query 34831 CCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGC 34890 | |||||||| || || || ||||| || |||||||| | || | || |||||||| Sbjct 19969609 CAAGCTGTTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGGATACCTTCCTTGTCCT 19969668 Query 34891 TAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| | || | ||| | ||| || || | ||| ||||| | Sbjct 19969669 GGATCTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCGACTTCAAGGGTGATGGTCT 19969728 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 |||| || ||||||||||| || ||||||||| Sbjct 19969729 TTCCAGTAAGAGTCTTCACGAAAATCTGCATA 19969760 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34766 CCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTC 34825 ||| | ||||||||||| || || ||||| || || || |||| | | | || | Sbjct 19970456 CCTGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCCAAGGTACGGCC 19970515 Query 34826 ATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34885 ||| |||| ||| ||||| || || || | || ||||| || | || | |||||||| Sbjct 19970516 ATCTTCCAACTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCCTCCTT 19970575 Query 34886 GTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTAT 34945 || ||||| || ||| | |||| ||| || || |||| ||| || Sbjct 19970576 ATCTTGGATCTTAGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACCTCGAGGGTGAT 19970635 Query 34946 GGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| |||||||| ||||||||||||||||| Sbjct 19970636 AGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 19970671 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||||||||| || ||| ||||| || || || |||| | | | || |||| Sbjct 13447151 CAACACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGCCCATC 13447092 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 |||| || || || || || || | || ||||| || | || | ||| ||||| || Sbjct 13447091 TTCCAATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATCCCTTCCTTATC 13447032 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||||| ||| || | |||| ||| || || |||| || || || Sbjct 13447031 CTGAATCTTCGCTTTAACATTGTCGATCGTATCAGAACTTTCCACCTCGAGAGTGATTGT 13446972 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 ||||| |||||||| ||||||||||||||||| Sbjct 13446971 CTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 13446939 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | || |||||||||||||| || |||| || | || |||| || Sbjct 13448351 ACCAAGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAGTGTACGACCATCCTCA 13448292 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || ||||| || |||||||| | || | || ||||| || Sbjct 13448291 AGCTGCTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGAATACCTTCCTTATCCTGG 13448232 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | ||| | |||||| || | || || || || Sbjct 13448231 ATCTTGGCCTTCACGTTATCAATAGTATCAGAGCTCTCAACTTCAAGTGTGATTGTCTTG 13448172 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || ||||||||||| || ||||||||| Sbjct 13448171 CCGGTAAGAGTCTTCACGAAAATCTGCATA 13448142 >seq4 Length=23266485 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34755 CCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAA 34814 || || |||||||| | ||||||||| | || ||| ||||| ||||| ||||||| | Sbjct 5744573 CCACCTCTCAACCTGAGAACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCCGCA 5744514 Query 34815 AGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGC 34874 || | | |||| || |||||||| || ||||| ||||| | ||| ||||| | || Sbjct 5744513 AGAGTACAACCATCTTCGAGCTGTTTACCCGCAAAGATTAGCCTTTGTTGGTCAGGAGGG 5744454 Query 34875 ACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACA 34934 | || || || || ||||||| |||||| | || | || |||||| Sbjct 5744453 ATTCCTTCTTTATCTTGAATCTTCGCCTTGACGTTGTCAATTGTATCTGAACTCTCAACT 5744394 Query 34935 TCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || | ||| ||| |||| || ||||| || ||||||||||| ||||| Sbjct 5744393 TCTAGGGTAATGATTTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 5744347 Score = 96.9 bits (106), Expect = 2e-15 Identities = 139/194 (72%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848 |||||||||||||| ||||||| |||| | || |||| || || |||||||||| || Sbjct 5738653 TCTTTCTGAATGTTGTAGTCCGCTAAAG--TCCGACCATCCTCTAGTTGTTTTCCGGTAA 5738596 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | ||||| | || ||||| | || | || |||||||| ||||||| |||| | Sbjct 5738595 AGATTAGCCTCTGTTGGTCCAGAGGGATTCCTTCCTTGTCTTGAATCTTCGCCTTGATGT 5738536 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 | || | || | |||||| || | ||| || ||||| || || || ||||| | Sbjct 5738535 TGTCAATAGTGTCTGAGCTCTCAACTTCTAGGGTAATAGTTTTACCAGTAAGCGTCTTGA 5738476 Query 34969 CAAAGATCTGCATA 34982 |||| ||||||||| Sbjct 5738475 CAAATATCTGCATA 5738462 >seq1 Length=25238555 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 34754 TCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGA 34813 |||||| || || | | |||||| |||| || ||||||||| ||| | || || | Sbjct 18011472 TCCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGCTGTAATCAGC 18011413 Query 34814 AAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGG 34873 || ||| | | || || | |||||||| ||||| || | ||||| ||||| | || Sbjct 18011412 GAGTGTTCTTCCGTCTTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCCGGTGG 18011353 Query 34874 CACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAAC 34933 | || |||||||| ||||||| ||| || | || | || | ||||| Sbjct 18011352 AATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCAATTGTGTCTGAAGATTCAAC 18011293 Query 34934 ATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCG 34986 || | |||||| || || ||||| || || ||||||||||||||||| |||| Sbjct 18011292 CTCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCAT-TTCG 18011241 Score = 86.0 bits (94), Expect = 4e-12 Identities = 106/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 34747 AATCAT--TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTT 34804 |||||| |||| ||||| | |||||||||||| |||| || |||||||||||||| Sbjct 21980162 AATCATGGTTCCACCCCTAAGCCTCAAAACCAAATGAAGCGTCGACTCTTTCTGAATGTT 21980221 Query 34805 ATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTG 34864 ||||||| || | || |||| || || ||||| || ||||| || | || || || Sbjct 21980222 GTAGTCCGCTAGTGTACGACCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTG 21980281 Query 34865 GTCTTGCGGCACCCCCTCCTTGTC 34888 ||| | || | ||||| ||||| Sbjct 21980282 ATCTGGTGGTATTCCCTCTTTGTC 21980305 >seq5 Length=22804910 Score = 89.7 bits (98), Expect = 3e-13 Identities = 139/198 (70%), Gaps = 12/198 (6%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| | || | ||| | || || || |||||||| || || Sbjct 22133769 TTCTTTCTGGATGTTGTAGTCAGCGAGAGTACGTCCGTCTTCGAGTTGTTTTCCAGCGAA 22133710 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGAC--- 34906 |||| ||||||||||| | || | || |||||||| ||||| |||||| Sbjct 22133709 GATTAAACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGGATCTTGGCTTTGACATT 22133650 Query 34907 --GGATGCTATC-GATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGT 34963 |||| |||| ||| | ||||| |||| || || || || ||||| || || Sbjct 22133649 GTCGATGGTATCTGAT------GATTCAACCTCGAGAGTGATTGTCTTCCCCGTTAGGGT 22133596 Query 34964 CTTCACAAAGATCTGCAT 34981 ||||| ||||||||||| Sbjct 22133595 TTTCACGAAGATCTGCAT 22133578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324523724816088