Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq20831 506 2e-138 >seq20831 Length=3535 Score = 506 bits (560), Expect = 2e-138 Identities = 583/785 (74%), Gaps = 0/785 (0%) Strand=Plus/Plus Query 84172 AAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAA 84231 |||| || ||||| || || | ||||||| ||||||||| |||||| |||||||| | Sbjct 1 AAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCA 60 Query 84232 GACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGAACT 84291 || || || || || |||||||| ||||| || |||||||| |||||||| ||||| Sbjct 61 ATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATC 120 Query 84292 TGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGACAA 84351 ||||||| | || || |||||||||| ||||| | ||| | | |||||| || | Sbjct 121 TGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCA 180 Query 84352 GTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACATGT 84411 ||||||||||| ||| |||| | || |||||||||||||| || || ||||||| Sbjct 181 AGGAACCATGCATAGCACTAAATAAGGAGCCGCCGAATACACCAGCTACACCTAACATGT 240 Query 84412 GAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTTC 84471 |||| || |||||||| ||||| || || |||||||| |||| ||| ||||||| || | Sbjct 241 GAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTAC 300 Query 84472 CTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGGA 84531 | ||||| || || ||||| |||||||| ||| ||||| || | || || | | || Sbjct 301 CAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAAATCAAGA 360 Query 84532 ATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATAC 84591 | ||||||| ||| |||||||| ||||| || || |||||| ||||| |||||||||| Sbjct 361 AAACAGCAGTTGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATAC 420 Query 84592 CGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGT 84651 | ||||| | ||||||||| ||||||||||| ||| | | |||||| | |||| Sbjct 421 CCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGT 480 Query 84652 GAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTT 84711 | | |||| |||| |||||| || || || ||||||||||| || | ||| |||| Sbjct 481 GTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTT 540 Query 84712 CCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAA 84771 |||| || || || ||||| | ||||||||| ||| | |||| | |||||| |||| Sbjct 541 CCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAA 600 Query 84772 TGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAA 84831 | || ||||||||||| | ||||| |||| || || ||||| ||||| |||||||| | Sbjct 601 TAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTA 660 Query 84832 CTGGGGGTGCACCAACGAATGCAATGATGAAACAGACAGTGGCAGCAAGTAGAGTTGGAA 84891 |||| || ||| ||| |||||| || || ||| | ||| || | | || || || | Sbjct 661 CTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGA 720 Query 84892 TCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGACCCAATCAC 84951 |||| | | |||||||| |||| || | ||| || | |||| ||| | ||| | || Sbjct 721 TCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTAC 780 Query 84952 AGAAG 84956 ||||| Sbjct 781 AGAAG 785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571075289510680