Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq5 185 1e-41 seq7 134 2e-26 seq6 109 6e-19 seq3 107 2e-18 >seq5 Length=22804910 Score = 185 bits (204), Expect = 1e-41 Identities = 579/886 (65%), Gaps = 17/886 (2%) Strand=Plus/Plus Query 18669 TTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACA 18728 ||| ||||| || ||||||| |||||||| |||||||| || || | ||| || | Sbjct 2412019 TTTCTGATAATCACCAACTCTCTTTTCAAAAAAATTAGTCTTCCCTTGTAAACTAATCAA 2412078 Query 18729 TTCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAG 18788 ||||| ||||||| ||||| | ||| ||| | ||| | || | | ||| Sbjct 2412079 CTCCATCCAATCAAAAGGATTACTCACACCATACACTTTACCATACCCAAGCGCACATAA 2412138 Query 18789 TAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAA 18848 | |||||||| ||||| | |||||| |||||| |||| |||||| || | || Sbjct 2412139 CAACCTATCCGCAACAAACTCAATATACTGACTCATCAATTCACCATTCATACCAACCAA 2412198 Query 18849 TTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAAT 18908 | ||| || || || | ||| ||| || || | || || || | | ||| Sbjct 2412199 CGCACAAGGAAGCGCTTCACATACAAACTCTCTCTCAATCTCAACCGCATCGCAAACAAT 2412258 Query 18909 AGATACAACTCTATCTTCATTAGGAG-GGTA--TAGAAGATGTTTAAACATCAAACATGC 18965 ||| ||||| || ||| || | |||| || ||| || |||| ||||||| || Sbjct 2412259 AGACTTCACTCTTTCCTCACTAAGCTTGGTACGTAACAGA-GTGTAAA--TCAAACAAGC 2412315 Query 18966 AAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGG 19025 |||||||| |||| || |||||||| || ||||| ||||| || ||||||||||| Sbjct 2412316 GAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTTAAACCAGG 2412375 Query 19026 CATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACC 19085 ||| ||||| | ||| || | |||||| || ||| || || ||||| ||||||||||| Sbjct 2412376 CATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAGAATATACC 2412435 Query 19086 TTCTACTGCTGCAAAAGCAACTAGTCTTTCTCC--ATAACTAGCATCATTATTATGAATC 19143 ||| || || || || || | | ||| | || | ||| || ||| Sbjct 2412436 TTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGATC-----CATCGATC 2412490 Query 19144 CATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAAT 19203 || ||| ||||| ||| ||||| | ||||| || || || || || | | ||| Sbjct 2412491 CAAGTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCACGGAAT 2412550 Query 19204 AGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCT 19263 |||| | || | ||||||| | || | || | | | | ||||| ||| Sbjct 2412551 AGATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATACATCTCT 2412610 Query 19264 GAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGT 19323 ||||| ||||| || ||||| || || |||||||| || | ||||| | | ||| Sbjct 2412611 GAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAGACTTGT 2412670 Query 19324 ACTTCACTACA-AAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAA 19382 || || ||| |||| | | | ||||| || ||||| ||| || || || Sbjct 2412671 ACATC-TGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCGGCGAA 2412729 Query 19383 AAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAATGTATT-CCAATCAT 19441 || || | ||| ||||| || || || ||| || | ||| | | || ||| ||| Sbjct 2412730 GAAAGCGAGTACGTGTTTGATGAAGTGACGTTC-TCCGTCGTTGAGATTTTCCCAGTCAC 2412788 Query 19442 TAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTAT 19501 | |||| || | |||||||||||| ||||||| || || || || ||||| || | Sbjct 2412789 GGTTGTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCTTTCTTGT 2412848 Query 19502 ACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCT 19547 |||| | ||| || | | || || || ||||| ||| ||||| Sbjct 2412849 ACATTTCCCAGATCTGTGGGTAGTGAATTGGAAACATACAGAATCT 2412894 >seq7 Length=29178675 Score = 134 bits (148), Expect = 2e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 ||||||||||| | ||| | ||||||| ||| | || || | ||| || ||||||||| Sbjct 28704345 CCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCTCAGCATCGGAACAATACCA 28704286 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 || ||| ||||| || || ||||||||||||| |||| | |||||| ||| ||| Sbjct 28704285 TTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTAGCACGGATATTATGAATCGAA 28704226 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| |||||||| || |||| ||| |||||| ||| | |||||||| ||| Sbjct 28704225 ACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTTTCAACGTATCATATATT 28704166 Query 48540 CCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTA 48581 || || ||||||||||| ||||| | ||||| || ||| Sbjct 28704165 CCCTCAATACTATCATCCTTCATACAAACAAGAAAGCAGCTA 28704124 Score = 125 bits (138), Expect = 8e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 |||||||| ||||| | || ||||| |||||| |||||||| ||| ||| | || | | Sbjct 28704028 GTTCCTGAGTTAAACAGAGTCGGAGACGCATGAGTAAACCATCTCTGTGACATTAAATGA 28703969 Query 48660 TATGTTTCAATAACAGAATCTATATCC-CATTGATGTATACCTATAGATACACGCATTAA 48718 || ||||| | | | ||||| ||||| | ||| |||||||| | |||||| | ||| || Sbjct 28703968 TACGTTTCCACAGCGGAATCAATATCTTCCTTG-TGTATACCAACAGATACTCTCATCAA 28703910 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||| | |||||| |||||||||| ||| | ||||||||||| || ||| | || | Sbjct 28703909 CATGTGTTGAGGCCTTTCAACAACTTTTCCTCTGATTTTCAAAAGGTAAGATCTCTCAAG 28703850 Query 48779 TGTTTTAAAACCAAAATA 48796 || || || ||||| || Sbjct 28703849 CGTCTTGAATCCAAAGTA 28703832 >seq6 Length=37079636 Score = 109 bits (120), Expect = 6e-19 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48360 CCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCA 48419 |||||||| || | ||| | ||||||| || | || | | |||||| ||||||||| Sbjct 31021629 CCTCCTTGGTCAACATAACGAGCAGTATCATTGAATACACGAAGCATTGGAACAATACCA 31021688 Query 48420 TTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAA 48479 ||||| | ||||| || || ||| ||||||||| | || | |||||| || |||| Sbjct 31021689 TTTGACGTTCCATTTGTGCCTCGAATGTAACTTCCAGTTGCACGGATATTATGAACTGAA 31021748 Query 48480 ATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATT 48539 | ||| || ||||| || ||| ||| | ||||||| ||| || || ||||| || Sbjct 31021749 ACACCAATGCCACCAGCAGATTTGCTTATAACAGCACACTCTTTGAGTGTTTCATATATG 31021808 Query 48540 CCTTCTATACTATCATCTATCAT 48562 || || || || |||||| |||| Sbjct 31021809 CCCTCGATGCTGTCATCTTTCAT 31021831 Score = 84.2 bits (92), Expect = 2e-11 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 48599 AGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTT 48658 |||||||| || || | || |||||||||||| | |||||| ||| || | || | Sbjct 31021969 AGTTCCTGCGTTGAAAAGAGTAGGAGATGCATGAGTGAACCATCTCTGAGACATTAAGTG 31022028 Query 48659 ATATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTA 48717 || |||| ||| |||| || ||||| | ||| ||||| || | || || | ||| | Sbjct 31022029 GTAAGTTTTAATTGCAGAGTCAATATCATCCTTG-TGTATCCCAACAGCAACCCTCATCA 31022087 Query 48718 ACATATATTGAGGTCTTTCAACAATTTTGTTATTT--ATTTTCAAAAGATATGATTTTTC 48775 ||| | |||||| || ||||||| |||| || | ||| || || |||||| | || Sbjct 31022088 GCATGTGTTGAGGCCTCTCAACAA--CTGTTCCTTGGACTTTTAAGAGGTATGATCTCTC 31022145 Query 48776 CAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTC 48811 | ||||| || ||||| || | |||| ||| || Sbjct 31022146 AAGCGTTTTGAATCCAAAGTAATCGTATTCAAAATC 31022181 >seq3 Length=27950219 Score = 107 bits (118), Expect = 2e-18 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 48600 GTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTA 48659 |||||||| ||||| | || |||| |||||| |||||||||||| || | || | | Sbjct 14115774 GTTCCTGAGTTAAACAGAGTCAGAGACGCATGAGTAAACCATTTCTGAGACATTAAATGA 14115833 Query 48660 TATGTTTCAATAACAGAATCTATATC-CCATTGATGTATACCTATAGATACACGCATTAA 48718 || ||||| | ||||||| ||||| | ||| |||||||| | ||| || | || || Sbjct 14115834 TACGTTTCCACCGCAGAATCAATATCTTCCTTG-TGTATACCAACAGAAACTCTAATCAA 14115892 Query 48719 CATATATTGAGGTCTTTCAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAA 48778 ||||| |||||| |||||||||| ||| || || ||||| | ||| | || | Sbjct 14115893 CATATGTTGAGGCCTTTCAACAACTTTTCCTCAGATCTTTAAAAGGGACGATCTCTCAAG 14115952 Query 48779 TGTTTTAAAACCAAAATA 48796 |||||| || ||||| || Sbjct 14115953 TGTTTTGAATCCAAAGTA 14115970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561913670956440