Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq20831 441 2e-119 seq6 93.3 1e-14 >seq20831 Length=3535 Score = 441 bits (488), Expect = 2e-119 Identities = 568/784 (72%), Gaps = 0/784 (0%) Strand=Plus/Plus Query 36172 AAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATGA 36231 |||| || | ||||||||||||| || ||| || || |||||||| |||||||| | Sbjct 1 AAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCA 60 Query 36232 GTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATT 36291 || ||||| || |||||||| || |||||||| || || ||||||||||| |||||| Sbjct 61 ATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATC 120 Query 36292 TATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAA 36351 | || || | || ||||||| | || ||||| | || | ||||| || | Sbjct 121 TGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCA 180 Query 36352 GACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATAT 36411 || ||||||||| ||||| | || |||||||| || || ||||| | ||| | Sbjct 181 AGGAACCATGCATAGCACTAAATAAGGAGCCGCCGAATACACCAGCTACACCTAACATGT 240 Query 36412 GGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCC 36471 | || || |||||||| || ||||| || ||||| || |||| |||||| |||||||| | Sbjct 241 GAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTAC 300 Query 36472 CTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGA 36531 | || || || ||||||||||||||||| ||||| ||||| |||| ||||| | |||| Sbjct 301 CAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAAATCAAGA 360 Query 36532 ATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATAC 36591 | |||||| ||| ||||||||||| |||||||| || ||| ||||| || | ||||| Sbjct 361 AAACAGCAGTTGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATAC 420 Query 36592 CTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGT 36651 | || | ||||||||||||| | || |||| ||| | | ||||| | ||||| Sbjct 421 CCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGT 480 Query 36652 GGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTT 36711 | | ||||| |||| ||| || || ||||| |||| ||| || || | || |||||||| Sbjct 481 GTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTT 540 Query 36712 CCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGA 36771 ||||||| ||||| || || | ||| || || || | || | || || || || | Sbjct 541 CCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAA 600 Query 36772 TGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCA 36831 | || |||||||| || || | | ||| || ||||| |||||||||||||| ||||| | Sbjct 601 TAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTA 660 Query 36832 CGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGA 36891 | ||||| ||||||| ||||| || | ||| | | ||| || || | | ||||| Sbjct 661 CTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGA 720 Query 36892 TCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCAC 36951 |||| | || |||||||| || | || || || || | || || || | ||||| || Sbjct 721 TCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTAC 780 Query 36952 ATAA 36955 | || Sbjct 781 AGAA 784 >seq6 Length=37079636 Score = 93.3 bits (102), Expect = 1e-14 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 36708 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCA 36767 ||||||||||| ||||| || || | || || || || | || | || || || Sbjct 27053676 GCTTCCCAGATCGGGTAAAAATGCAAACA-ATAGCTGCTGAAGTAGGAATAATGGCACCT 27053734 Query 36768 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 36827 || || || ||||||||||| || | | ||| || |||| |||||||||||||| ||| Sbjct 27053735 GAAATAATATTGTTTCCATAAAGAAGAGATCCAGAAACAGATTCACGAATACCATCAATA 27053794 Query 36828 TCCACGGGAGGCGCAGCAACAAATGC--AATTAAAAATGCTGTCACTGCTGTTAAAAGTG 36885 || || ||||| | ||||| ||||| |||||||| | | ||| || || | | Sbjct 27053795 TCTACTGGAGGAGTAGCAATGAATGCGATATTAAAAA--CGGAAGTTGCGGTCAATAAGG 27053852 Query 36886 CAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTT 36938 ||| ||||| | || |||||||| || | || || || || ||| ||||| Sbjct 27053853 TAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT-TTTTTACTT 27053904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150404783053934