Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq20831 434 3e-117 seq6 113 1e-20 >seq20831 Length=3535 Score = 434 bits (480), Expect = 3e-117 Identities = 565/777 (73%), Gaps = 6/777 (1%) Strand=Plus/Plus Query 5404 GAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAA 5463 ||||||||||||| ||| |||||| || |||||||| |||||||| | || ||||| Sbjct 11 GAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAA 70 Query 5464 GTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATA 5523 || |||||||| || |||||||| || |||||||| ||||| |||||| | || || | Sbjct 71 ATAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTC 130 Query 5524 GTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATG 5583 || ||| | | || ||||| | || | |||||| || | ||||| Sbjct 131 ATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATG 190 Query 5584 CATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATG 5643 ||||||| || || | || |||||||| ||||| ||||| | |||||| || || || Sbjct 191 CATAGCACTAAATAAGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTG 250 Query 5644 CATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACC 5703 |||||| || ||||| || ||||||||||| | ||||||||| |||||||||||||| || Sbjct 251 CATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCC 310 Query 5704 AAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGT 5762 ||||||||||||||| |||||||| || || | ||||| | || || || | ||| Sbjct 311 TAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGT 370 Query 5763 AGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGT 5822 || || ||||| || ||||||||||| || |||||| || ||||| || | | | Sbjct 371 -TGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGA 429 Query 5823 AACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGA 5882 ||||||||||||| | || |||| ||| || | ||||| | ||||| | || | Sbjct 430 AACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAA 489 Query 5883 CGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGAT 5940 |||| || || || || ||||| ||||||||||| | ||| || ||||||||||| Sbjct 490 TTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGAT--GCAGCTTCCCAGAT 547 Query 5941 GGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTT 6000 || || || || || ||||| || || | || | || ||| ||||| || || || Sbjct 548 CGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATT 607 Query 6001 GTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGG 6060 |||||| || || |||||||| | || |||||||| || || || || || ||||| || Sbjct 608 GTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGG 667 Query 6061 TGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAA 6120 ||||| | |||||| | ||||| | | ||||||||| || | | || ||||| || Sbjct 668 AGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAA 727 Query 6121 GACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 ||||||||||| || | || || || || | ||||| || | ||||| |||||| Sbjct 728 AACACCAAACCATCCAATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 784 >seq6 Length=37079636 Score = 113 bits (124), Expect = 1e-20 Identities = 163/226 (72%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 5929 TGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGC-GTTGGAGCTGGGTACAACGGCTC 5987 |||||||||||| || || || || || | ||| || | || || | || | || ||| | Sbjct 27053675 TGCTTCCCAGATCGGGTAAAAATGCAAAC-AATAGCTGCTGAAG-TAGGAATAATGGCAC 27053732 Query 5988 CTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGA 6047 |||| || || ||||||||||| || |||||||| | || | |||||| || || || | Sbjct 27053733 CTGAAATAATATTGTTTCCATAAAGAAGAGATCCAGAAACAGATTCACGAATACCATCAA 27053792 Query 6048 TGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTG 6107 | || ||||| || | ||| | |||||| | |||| | | ||||||||| || | | Sbjct 27053793 TATCTACTGGAGGAGTAGCAATGAATGCGATATTAAAAACGGAAGTTGCGGTCAATAAGG 27053852 Query 6108 CGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTT 6153 || ||||| || ||||||||||| || | || || || || || Sbjct 27053853 TAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTT 27053898 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152599259119506