Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq20831 435 9e-118 seq6 96.9 1e-15 >seq20831 Length=3535 Score = 435 bits (482), Expect = 9e-118 Identities = 567/784 (72%), Gaps = 0/784 (0%) Strand=Plus/Plus Query 25652 AAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGATGA 25711 |||| || | ||||||||||||| ||| ||| || || |||||||| |||||||| | Sbjct 1 AAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCA 60 Query 25712 GTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAATT 25771 || ||||| || |||||||| || |||||||| || || ||||||||||| |||||| Sbjct 61 ATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATC 120 Query 25772 TATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAA 25831 | || || | || ||||||| | || ||||| | || | ||||| || | Sbjct 121 TGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCA 180 Query 25832 GACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATAT 25891 || ||||||||| ||||| | || |||||||| || || ||||| | ||| | Sbjct 181 AGGAACCATGCATAGCACTAAATAAGGAGCCGCCGAATACACCAGCTACACCTAACATGT 240 Query 25892 GGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCC 25951 | || || |||||||| || ||||| || ||||| || |||| |||||| |||||||| | Sbjct 241 GAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTAC 300 Query 25952 CTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGA 26011 | || || || ||||||||||||||||| ||||| ||||| |||| ||||| | |||| Sbjct 301 CAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAAATCAAGA 360 Query 26012 ATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGC 26071 | |||||| ||| ||||||||||| |||||||| || ||| ||||| || | ||| | Sbjct 361 AAACAGCAGTTGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATAC 420 Query 26072 CTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGT 26131 | || | ||||||||||||| | || |||| ||| | | || | | ||||| Sbjct 421 CCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGT 480 Query 26132 GGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTT 26191 | | ||||| |||| ||| || || ||||| || | ||| || || | || |||||||| Sbjct 481 GTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTT 540 Query 26192 CCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGA 26251 ||||||| ||||| || || | ||| || || ||| | || | || || ||||| | Sbjct 541 CCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAA 600 Query 26252 TGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCA 26311 | || |||||||| || || | | ||| || ||||| |||||||||||||| ||||| | Sbjct 601 TAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTA 660 Query 26312 CGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGA 26371 | ||||| ||||||| ||||| || | ||| | | ||| || || | | ||||| Sbjct 661 CTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGA 720 Query 26372 TCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCAC 26431 |||| | || |||||||| || | || || || || | || || || | ||||| || Sbjct 721 TCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTAC 780 Query 26432 ATAA 26435 | || Sbjct 781 AGAA 784 >seq6 Length=37079636 Score = 96.9 bits (106), Expect = 1e-15 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Plus Query 26188 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 26247 ||||||||||| ||||| || || | || || || || | || | || || ||| Sbjct 27053676 GCTTCCCAGATCGGGTAAAAATGCAAACA-ATAGCTGCTGAAGTAGGAATAATGGCACCT 27053734 Query 26248 GAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATA 26307 || || || ||||||||||| || | | ||| || |||| |||||||||||||| ||| Sbjct 27053735 GAAATAATATTGTTTCCATAAAGAAGAGATCCAGAAACAGATTCACGAATACCATCAATA 27053794 Query 26308 TCCACGGGAGGCGCAGCAACAAATGC--AATTAAAAATGCTGTCACTGCTGTTAAAAGTG 26365 || || ||||| | ||||| ||||| |||||||| | | ||| || || | | Sbjct 27053795 TCTACTGGAGGAGTAGCAATGAATGCGATATTAAAAA--CGGAAGTTGCGGTCAATAAGG 27053852 Query 26366 CAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTT 26418 ||| ||||| | || |||||||| || | || || || || ||| ||||| Sbjct 27053853 TAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT-TTTTTACTT 27053904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151943475455596