Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq5 131 2e-25 >seq5 Length=22804910 Score = 131 bits (144), Expect = 2e-25 Identities = 346/526 (66%), Gaps = 7/526 (1%) Strand=Plus/Plus Query 37173 AAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTT 37232 ||||| || |||||||| ||||||||||| ||||| || ||||| ||||| || ||| Sbjct 2412308 AAACAAGCGAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTT 2412367 Query 37233 AATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAAG 37292 || || ||||| | || | ||| |||| ||| || || | || || ||||| ||| Sbjct 2412368 AAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAG 2412427 Query 37293 AAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCA 37352 || ||||||||||| || || ||||| | |||| | |||| ||| | | || Sbjct 2412428 AATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTT---TGAGATCCA 2412484 Query 37353 GAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCT 37412 ||||| | | | ||| || || ||||||| ||| ||||| ||||| Sbjct 2412485 TCGATCCAAGTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTGCA 2412544 Query 37413 TTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATAC 37472 || ||| | | |||||| ||||| | || ||||| || | || | | |||| Sbjct 2412545 CGGAATAGATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAATAC 2412604 Query 37473 ATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGAT 37532 || || || || ||||| |||||||| || || || || || || | ||||| || Sbjct 2412605 ATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGGAG 2412664 Query 37533 AATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCT 37592 | ||| ||||| | || | ||| | |||||| || || || ||| || Sbjct 2412665 ACTTGTACATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGATGCG 2412724 Query 37593 GCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAT--TTGATAATTTTTTCC 37650 || |||||||| || || | ||| || || || | ||| | | |||| | |||| || Sbjct 2412725 GCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGA--TTTTCCC 2412782 Query 37651 AATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAA 37696 | ||| | |||| ||| | ||| ||||| || | ||||| || Sbjct 2412783 AGTCACGGTTGTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAA 2412828 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592111184626840