Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq2 93.3 1e-13 >seq2 Length=28351830 Score = 93.3 bits (102), Expect = 1e-13 Identities = 279/417 (67%), Gaps = 18/417 (4%) Strand=Plus/Plus Query 150364 GATTCTTTCTCGTAAAACCAAAAAGAAT--GGTGCGTTAGTTGGTGAACCAGGTGTTGGT 150421 ||||||||| | | || || || ||| ||||| ||| | || || ||||| ||||| Sbjct 23648833 GATTCTTTCGAGGAGGACTAAGAACAATCCGGTGC-TTA-TCGGAGAGCCAGGAGTTGGG 23648890 Query 150422 AAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCCAGATTCT 150481 ||||| | ||||| || ||||||||| | || | || || ||||||||| | | Sbjct 23648891 AAAACTGCTGTTGTTGAAGGTTTAGCACAAAGGATTGTGAAAGGAGATGTTCCAAACAGT 23648950 Query 150482 ATGAAAGATGTTGAAATTC-TTTCTTTGAATATGGGTGCATTTACTGCTGGTACTAAGTA 150540 | | ||||| || || ||||||| | |||||||| || ||||||| ||||||| Sbjct 23648951 CTTACTGATGT-GAGGTTGATTTCTTTAGACATGGGTGCTTTAGTTGCTGGTGCTAAGTA 23649009 Query 150541 TCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTAC--AAGAACTAAAAGAACGCGAT 150598 | || || || |||||| | | || ||| || | ||||| | ||||| || Sbjct 23649010 CAGAGGAGAGTTTGAAGAAAGATT-GA-AATCTGTTTTGAAAGAAGTTGAAGAAGCTGAA 23649067 Query 150599 G---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGACTGGC 150655 | | || |||||||| || ||||| || ||| || | ||||||||| |||| Sbjct 23649068 GGGAAAGTGATTCTGTTTATTGATGAGATTCATTTGGTTCTTGGTGCTGGTAAAACTGAA 23649127 Query 150656 GGCGGTTCTTTGGATATGAGC-AATATGTTAAAACCTGCTCTATCTCGCGGTGAAATTCG 150714 ||| || ||||| ||| ||| |||| || ||| || || | ||| | |||| Sbjct 23649128 GGC---TCGATGGATGC-AGCGAATTTGTTCAAGCCTATGTTAGCTAGAGGTCAGCTTCG 23649183 Query 150715 TGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAGC 150771 ||| ||||| ||||| || || || | || | |||| ||||||||||| Sbjct 23649184 ATGCATTGGTGCTACAACTCTTGAAGAGTACAGGAAGTATGTTGAGAAAGATGCAGC 23649240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147182069045958