Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_019444.1 Length=176043 Score E Sequences producing significant alignments: (Bits) Value seq3 398 9e-106 seq20831 361 6e-95 seq7 163 3e-35 seq2 138 1e-27 >seq3 Length=27950219 Score = 398 bits (440), Expect = 9e-106 Identities = 681/987 (69%), Gaps = 1/987 (0%) Strand=Plus/Minus Query 164641 GCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTGGCCATTG 164700 ||||||||||||| || |||||||| || | || |||| ||| ||| | || | | Sbjct 12152868 GCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAG 12152809 Query 164701 GCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTT 164760 | | |||| | || || || | ||||| || ||||| || ||||| | ||| || Sbjct 12152808 GGGATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTT 12152749 Query 164761 CCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTATGG 164820 ||||| | |||||| || ||| || || || | ||||| |||||| || | | | Sbjct 12152748 CCTATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAG 12152689 Query 164821 GTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCC 164880 |||||| | | |||| ||||||| ||| | || | |||| || ||||| | Sbjct 12152688 CACATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTC 12152629 Query 164881 AACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCA 164940 || | || || || | | ||| || |||||| |||| || || || |||| |||| | Sbjct 12152628 AATTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTA 12152569 Query 164941 TGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTATCCGTCCTTACAATGCTATTGCGT 165000 || | || || ||||| || || || | || | || ||||| ||||| || || | Sbjct 12152568 TGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCGCAT 12152509 Query 165001 TCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCA 165060 |||||||||| || ||||||||||| ||| |||| || || ||||||||||| || Sbjct 12152508 TCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTG 12152449 Query 165061 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTC 165120 ||||||| || || || ||||| || || || || ||| ||||| | | || | | Sbjct 12152448 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTT-TCC 12152390 Query 165121 AAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGG 165180 |||| || || || |||| | ||||| || ||||||||||| || | ||| | | | Sbjct 12152389 AAGGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCG 12152330 Query 165181 GAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATG 165240 | | || |||||| ||||||||||| | || || |||||||| |||| || |||| Sbjct 12152329 GCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATG 12152270 Query 165241 GAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTA 165300 | || |||||||| || || ||| | | || || | ||||| |||||||| | Sbjct 12152269 GTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 12152210 Query 165301 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGT 165360 ||||||| || |||||||| ||||| | |||| || |||| ||||| || || || | Sbjct 12152209 TGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTT 12152150 Query 165361 GGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCA 165420 || | ||||| | ||||| ||||| | || | ||| | |||| || |||| Sbjct 12152149 GGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAG 12152090 Query 165421 TTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAG 165480 | | || || ||| | ||||| |||| || || ||||| ||||| | | | |||| Sbjct 12152089 TAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAG 12152030 Query 165481 CAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTAC 165540 | |||||| | |||||||||| ||| | || ||||| || || || || ||||| | | Sbjct 12152029 CGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTC 12151970 Query 165541 GTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTAT 165600 |||||||| |||| || ||| | || ||||||||| |||| |||| || || || Sbjct 12151969 GTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTC 12151910 Query 165601 TGCCTAGAGGCAACGCCCTTTAATAAA 165627 | || | || ||||| ||||||| || Sbjct 12151909 TACCACGTGGAAACGCTCTTTAATGAA 12151883 >seq20831 Length=3535 Score = 361 bits (400), Expect = 6e-95 Identities = 506/710 (71%), Gaps = 0/710 (0%) Strand=Plus/Minus Query 162934 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTC 162993 || ||||| || || ||||||| || || | ||| | |||||| | ||| || || Sbjct 742 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 683 Query 162994 GCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCA 163053 || ||| | |||||||| || || || ||||| || || ||||| || || |||| || Sbjct 682 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 623 Query 163054 CTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 163113 || | || || ||||| || || || ||||| || |||| |||| || |||||| Sbjct 622 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 563 Query 163114 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 163173 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 562 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 503 Query 163174 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAA 163233 |||| |||| | || | ||||| | | || | | |||||||| ||||| Sbjct 502 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 443 Query 163234 TGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCT 163293 ||||||||| | || | |||||||| || ||||| ||| ||||| || || ||| Sbjct 442 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 383 Query 163294 GTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 163353 |||||||| ||| | || || ||| || | || || | |||||||| ||| ||||| Sbjct 382 GTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGAT 323 Query 163354 GCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCAC 163413 | ||||| || || |||||||| || ||||||| ||| |||| ||||| || |||||| Sbjct 322 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 263 Query 163414 AACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTC 163473 ||||| || |||||||| || || ||||| || || |||||||| ||||| || || | Sbjct 262 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTA 203 Query 163474 TTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACT 163533 || || |||||||| | || || ||| | || | || || || |||| | Sbjct 202 TTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 143 Query 163534 GAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCA 163593 || || || | ||||||| || || ||||||||||| || |||||||| || || Sbjct 142 GAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCT 83 Query 163594 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAA 163643 || ||||| || || || || ||||||||||||||||| |||||||| Sbjct 82 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 33 >seq7 Length=29178675 Score = 163 bits (180), Expect = 3e-35 Identities = 203/277 (73%), Gaps = 1/277 (0%) Strand=Plus/Minus Query 165113 GTTCCTTC-AAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAG 165171 |||| ||| |||| || || || ||||| ||||| || ||||||||||| || || | Sbjct 25949514 GTTCTTTCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCG 25949455 Query 165172 GTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTAT 165231 || | |||| | || |||||| ||||||||||| | || || |||||||| |||| Sbjct 25949454 GTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTAT 25949395 Query 165232 ACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGA 165291 || ||||| || |||||||| || || ||| | | || || | ||||| | Sbjct 25949394 TTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAA 25949335 Query 165292 CTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTA 165351 ||||||| |||||||| || |||||||| ||||| || ||||| || |||| ||||| | Sbjct 25949334 CTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCA 25949275 Query 165352 ACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCC 165388 | || || ||| | ||||| || ||||| ||||| || Sbjct 25949274 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq2 Length=28351830 Score = 138 bits (152), Expect = 1e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122 ||| | || |||||||| |||||||||||| | ||| | ||||||||| ||||||||| Sbjct 3660660 TACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 3660601 Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182 | || || |||||||||||| || |||||| |||||||||| ||| ||| Sbjct 3660600 TCATGTTCAAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTTGATCAATCTGACCAGAGT 3660541 Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242 ||||| || ||||| |||||||| | |||||| || || || |||| || ||||| || Sbjct 3660540 TTCCTCGATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTACC 3660481 Query 164243 TCTGAT 164248 |||||| Sbjct 3660480 TCTGAT 3660475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563014088827480