Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12]
27,771 sequences; 308,032,609 total letters
Query= NC_019444.1
Length=176043
Score E
Sequences producing significant alignments: (Bits) Value
seq3 398 9e-106
seq20831 361 6e-95
seq7 163 3e-35
seq2 138 1e-27
>seq3
Length=27950219
Score = 398 bits (440), Expect = 9e-106
Identities = 681/987 (69%), Gaps = 1/987 (0%)
Strand=Plus/Minus
Query 164641 GCTTTGTTTTTGTGGGGTGGTCTGGATTACTACTTCTTCCCACTGCTTATCTGGCCATTG 164700
||||||||||||| || |||||||| || | || |||| ||| ||| | || | |
Sbjct 12152868 GCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAG 12152809
Query 164701 GCGGTTGGCTTACTGGCACAGCTTTTGTCACGAGTTGGTACACCCATGGTCTTGCTTCTT 164760
| | |||| | || || || | ||||| || ||||| || ||||| | ||| ||
Sbjct 12152808 GGGATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTT 12152749
Query 164761 CCTATCTTGAAGGTGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGATGCTATGG 164820
||||| | |||||| || ||| || || || | ||||| |||||| || | | |
Sbjct 12152748 CCTATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAG 12152689
Query 164821 GTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCC 164880
|||||| | | |||| ||||||| ||| | || | |||| || ||||| |
Sbjct 12152688 CACATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTC 12152629
Query 164881 AACTTGGGGGACTATGGAATTTCGTGGCTCTCCACGGTGCCTTCGCCCTAATTGGTTTCA 164940
|| | || || || | | ||| || |||||| |||| || || || |||| |||| |
Sbjct 12152628 AATTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTA 12152569
Query 164941 TGCTCCGCCAGTTTGAGCTGGCACGTCTCATTGGTATCCGTCCTTACAATGCTATTGCGT 165000
|| | || || ||||| || || || | || | || ||||| ||||| || || |
Sbjct 12152568 TGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCGCAT 12152509
Query 165001 TCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTTATCTACCCACTGGGTCAGTCCA 165060
|||||||||| || ||||||||||| ||| |||| || || ||||||||||| ||
Sbjct 12152508 TCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTG 12152449
Query 165061 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTC 165120
||||||| || || || ||||| || || || || ||| ||||| | | || | |
Sbjct 12152448 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTT-TCC 12152390
Query 165121 AAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAGGTATCTTGG 165180
|||| || || || |||| | ||||| || ||||||||||| || | ||| | | |
Sbjct 12152389 AAGGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCG 12152330
Query 165181 GAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTATACGAGGATG 165240
| | || |||||| ||||||||||| | || || |||||||| |||| || ||||
Sbjct 12152329 GCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATG 12152270
Query 165241 GAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTA 165300
| || |||||||| || || ||| | | || || | ||||| |||||||| |
Sbjct 12152269 GTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 12152210
Query 165301 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTAACAAGCGGT 165360
||||||| || |||||||| ||||| | |||| || |||| ||||| || || || |
Sbjct 12152209 TGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTT 12152150
Query 165361 GGCTTCATTTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCA 165420
|| | ||||| | ||||| ||||| | || | ||| | |||| || ||||
Sbjct 12152149 GGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAG 12152090
Query 165421 TTATTGGTCTTGCTCTCAACCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAG 165480
| | || || ||| | ||||| |||| || || ||||| ||||| | | | ||||
Sbjct 12152089 TAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAG 12152030
Query 165481 CAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGGACTAC 165540
| |||||| | |||||||||| ||| | || ||||| || || || || ||||| | |
Sbjct 12152029 CGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTC 12151970
Query 165541 GTGCTTGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTAT 165600
|||||||| |||| || ||| | || ||||||||| |||| |||| || || ||
Sbjct 12151969 GTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTC 12151910
Query 165601 TGCCTAGAGGCAACGCCCTTTAATAAA 165627
| || | || ||||| ||||||| ||
Sbjct 12151909 TACCACGTGGAAACGCTCTTTAATGAA 12151883
>seq20831
Length=3535
Score = 361 bits (400), Expect = 6e-95
Identities = 506/710 (71%), Gaps = 0/710 (0%)
Strand=Plus/Minus
Query 162934 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACTATCTGTTTCATCGTC 162993
|| ||||| || || ||||||| || || | ||| | |||||| | ||| || ||
Sbjct 742 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 683
Query 162994 GCCTTCGTCGCTGCTCCCCCTGTGGACATTGACGGCATCCGTGAGCCCGTCGCTGGTTCA 163053
|| ||| | |||||||| || || || ||||| || || ||||| || || |||| ||
Sbjct 682 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 623
Query 163054 CTCATGTATGGCAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCCAACGCAATTGGT 163113
|| | || || ||||| || || || ||||| || |||| |||| || ||||||
Sbjct 622 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 563
Query 163114 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 163173
| || || || || ||||||||||| ||||| ||||||| ||||| || ||||| |||
Sbjct 562 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 503
Query 163174 CCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAA 163233
|||| |||| | || | ||||| | | || | | |||||||| |||||
Sbjct 502 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 443
Query 163234 TGGGAACTTTCATATCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATACTCTGCACCT 163293
||||||||| | || | |||||||| || ||||| ||| ||||| || || |||
Sbjct 442 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 383
Query 163294 GTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGAC 163353
|||||||| ||| | || || ||| || | || || | |||||||| ||| |||||
Sbjct 382 GTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGAT 323
Query 163354 GCAATGCCACTTGGCATCTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCAC 163413
| ||||| || || |||||||| || ||||||| ||| |||| ||||| || ||||||
Sbjct 322 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 263
Query 163414 AACATCCTGATGCACCCCTTCCATATGTTGGGAGTCGCTGGTGTCTTCGGTGGATCACTC 163473
||||| || |||||||| || || ||||| || || |||||||| ||||| || || |
Sbjct 262 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTA 203
Query 163474 TTCTCGGCAATGCATGGCAGTCTTGTTACCTCTTCACTCGTCCGTGAGACGACTGAAACT 163533
|| || |||||||| | || || ||| | || | || || || |||| |
Sbjct 202 TTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAAT 143
Query 163534 GAGTCACAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACATACAACATCGTTGCA 163593
|| || || | ||||||| || || ||||||||||| || |||||||| || ||
Sbjct 142 GAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCT 83
Query 163594 GCACATGGCTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAA 163643
|| ||||| || || || || ||||||||||||||||| ||||||||
Sbjct 82 GCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAA 33
>seq7
Length=29178675
Score = 163 bits (180), Expect = 3e-35
Identities = 203/277 (73%), Gaps = 1/277 (0%)
Strand=Plus/Minus
Query 165113 GTTCCTTC-AAGGATTCCACAACTGGACCCTCAACCCCTTCCATATGATGGGTGTTGCAG 165171
|||| ||| |||| || || || ||||| ||||| || ||||||||||| || || |
Sbjct 25949514 GTTCTTTCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCG 25949455
Query 165172 GTATCTTGGGAGGAGCATTGCTATCTGCTATTCATGGAGTCACAGTTGAAAATACATTAT 165231
|| | |||| | || |||||| ||||||||||| | || || |||||||| ||||
Sbjct 25949454 GTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTAT 25949395
Query 165232 ACGAGGATGGAGAGCAGGCAAATACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGA 165291
|| ||||| || |||||||| || || ||| | | || || | ||||| |
Sbjct 25949394 TTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAA 25949335
Query 165292 CTTATTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGCATTGCGTTTTCTA 165351
||||||| |||||||| || |||||||| ||||| || ||||| || |||| ||||| |
Sbjct 25949334 CTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCA 25949275
Query 165352 ACAAGCGGTGGCTTCATTTTTTCATGTTGTTTGTGCC 165388
| || || ||| | ||||| || ||||| ||||| ||
Sbjct 25949274 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238
>seq2
Length=28351830
Score = 138 bits (152), Expect = 1e-27
Identities = 142/186 (76%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 164063 TACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATTAATTACTCTTGTCGTGCTGGT 164122
||| | || |||||||| |||||||||||| | ||| | ||||||||| |||||||||
Sbjct 3660660 TACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTACTCTTGCCGTGCTGGT 3660601
Query 164123 GCTTGCTCCTCATGTGCAGGTAAAATTGTATCTGGAACTGTTGATCAGAGTGATCAGTCA 164182
| || || |||||||||||| || |||||| |||||||||| ||| |||
Sbjct 3660600 TCATGTTCAAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTTGATCAATCTGACCAGAGT 3660541
Query 164183 TTCCTAGACGATGATCAGATTGCAGCAGGATTCGTGCTTACGTGTGTAGCATATCCAACA 164242
||||| || ||||| |||||||| | |||||| || || || |||| || ||||| ||
Sbjct 3660540 TTCCTCGATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGTGCTGCTTATCCTACC 3660481
Query 164243 TCTGAT 164248
||||||
Sbjct 3660480 TCTGAT 3660475
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 563014088827480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |