Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_019516.1 Length=161440 Score E Sequences producing significant alignments: (Bits) Value seq20831 542 3e-149 seq3 455 3e-123 seq7 187 3e-42 seq6 95.1 1e-14 >seq20831 Length=3535 Score = 542 bits (600), Expect = 3e-149 Identities = 569/744 (76%), Gaps = 8/744 (1%) Strand=Plus/Minus Query 8290 GGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGCTACAATTTGC---TTCAT 8345 || |||||||| ||| | |||||||| ||| || ||| |||| || || | || || Sbjct 742 GGATGGTTTGGTGTTTTGATGATCCCTACC-TTATTGACCGCAAC---TTCCGTTTTTAT 687 Query 8346 TACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCATCCGCGAACCAGTTGCTGG 8405 || ||||||| ||||||||||||| || || || || || || || ||||| ||| |||| Sbjct 686 TATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGG 627 Query 8406 ATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGTTCCCAGCTCTAACGCAAT 8465 |||||| | ||||| ||||| || || || ||||| || |||| | ||| || || Sbjct 626 ATCTCTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTAT 567 Query 8466 TGGCCTCCACTTCTACCCCATCTGGGAAGCCGCTTCTCTTGATGAGTGGCTCTACAACGG 8525 ||| | || || ||||| ||||||||||| || || ||||||| ||||| |||||||| Sbjct 566 TGGTTTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGG 507 Query 8526 TGGTCCTTACCAGCTTGTAGTTTTCCACTTCCTCCTTGGCGTCTTTGCTTATATGGGTCG 8585 |||||||| | || | ||| | ||||| | ||||| || | |||||||||||| Sbjct 506 CGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCG 447 Query 8586 TGAATGGGAACTTTCTTACCGCCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGC 8645 ||| ||||||||| || ||| || || |||||||||||||| ||||||||| || || Sbjct 446 TGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGC 387 Query 8646 TCCTGTTGCCGCTGCTTCTGCTGTATTCCTTGTCTATCCTTTTGGTCAAGGTTCGTTCTC 8705 ||||||||| ||||| ||||||| ||| | | || || |||||||||| || || Sbjct 386 TCCTGTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTC 327 Query 8706 TGATGGTATGCCTCTTGGTATCTCCGGTACGTTCAACTATATGCTTGTCTTCCAGGCTGA 8765 ||||||||||||||| || ||||| ||||| ||||||| |||| |||| ||||||||||| Sbjct 326 TGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGA 267 Query 8766 GCACAACATCCTGATGCACCCCTTCCACATGCTTGGTGTTGCTGGTGTCTTCGGCGGATC 8825 ||||||||| || |||||||| || |||||| | ||||| |||||||| |||||||| || Sbjct 266 GCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTC 207 Query 8826 TCTCTTTTCCGCAATGCATGGTTCACTCGTTACTTCTTCGCTGGTTCGTGAGACCACCGA 8885 | ||| || ||||||||||| | || |||||| || | | || ||||| || Sbjct 206 CTTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGA 147 Query 8886 AACCGAGTCTCAAAACTATGGCTACAAGTTCGGTCAAGAAGAGGAAACTTACAACATTGT 8945 || || ||| || | || |||| ||||| |||||||| ||||||||||||||||| Sbjct 146 AAATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGT 87 Query 8946 TGCCGCTCATGGCTACTTTGGTCGCTTGATCTTCCAATATGCATCTTTTAACAATTCTAG 9005 || |||||||| || ||||| || ||||||||||||||||| ||| ||||||||| | Sbjct 86 AGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCG 27 Query 9006 AAGCTTGCATTTCTTCCTCGCTGC 9029 || ||||||||| | || || Sbjct 26 TTCTTTACATTTCTTCTTAGCGGC 3 >seq3 Length=27950219 Score = 455 bits (504), Expect = 3e-123 Identities = 703/1000 (70%), Gaps = 5/1000 (1%) Strand=Plus/Minus Query 9815 TTTGACATCCTTGATGACTGGCTTAAACGAGATC--GCTTTGTTTTTGTGGGTTGGTCTG 9872 ||||| || | ||||||||| | | ||| | ||||||||||||| |||||||||| Sbjct 12152902 TTTGATATTATGGATGACTGGTT--ACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTG 12152845 Query 9873 GACTACTTCTTTTTCCCACTGCTTATCTTGCAATTGGTGGCTGGCTTACTGGCACTACGT 9932 | ||| | || ||||| ||| ||| | || | || | ||| | || || | || | Sbjct 12152844 GTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCT 12152785 Query 9933 TTGTCACGAGTTGGTACACTCACGGACTTGCAAGTAGTTACCTTGAGGGTGCTAATTTCC 9992 |||| || ||||| ||||| ||| | || ||| || | || ||| ||||| Sbjct 12152784 TTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTT 12152725 Query 9993 TTACAGCGGCTGTCTCAACGCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTTTGGG 10052 || || || | || || |||||| || | | | |||||| | | |||| |||| Sbjct 12152724 AAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGG 12152665 Query 10053 GTCCTGAGTCTCAGGGAGATTTCGTCCGCTGGATCCAGCTTGGGGGACTCTGGGCTTTTG 10112 ||| ||| | || ||||||| || ||| || | || || |||| |||||||| Sbjct 12152664 GTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTG 12152605 Query 10113 TGGCGCTCCACGGAGCCTTCGCTTTAATCGGCTTTATGTTACGCCAGTTTGAGCTGGCGA 10172 | || ||| |||| || || || ||||| | ||||||||||| || ||||| || || Sbjct 12152604 TTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTC 12152545 Query 10173 GATTAATTGGAATCCGACCTTACAATGCTATCGCGTTTTCTGGGCCTATTGCTGTTTTTG 10232 ||| || | | || ||||| ||||| ||||| || ||||| || || |||||||||| Sbjct 12152544 GATCCGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTTG 12152485 Query 10233 TCAGTGTTTTCCTCATCTATCCACTCGGACAGTCTAGTTGGTTCTTTGCGCCGAGTTTCG 10292 | ||| |||| || |||||||| || || ||| |||||||||||||||| ||||| | Sbjct 12152484 TTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 12152425 Query 10293 GCGTCGCGGCGATTTTCCGCTTCCTTCTCTTCCTCCAGGGCTTTCATAATTGGACGCTCA 10352 | || ||||| || || || ||| | || || |||| || ||||||||||||| | | Sbjct 12152424 GTGTAGCGGCTATATTTCGATTCATCCTTTTT-TCCAAGGGTTTCATAATTGGATATTGA 12152366 Query 10353 ATCCCTTCCATATGATGGGAGTTGCTGGTATACTGGGAGGGGCGCTCCTATCAGCAATCC 10412 | || || |||||||||||||| | ||| |||| || | || || |||| || || | Sbjct 12152365 ACCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATTC 12152306 Query 10413 ACGGAGTCACTGTAGAAAACACACTTTATCAAGATGGCGAACAAGCAAACACTTTCAAAG 10472 | || | ||||||||||| || | | | ||||||| || ||||| || ||| | Sbjct 12152305 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 12152246 Query 10473 CTTTTGATAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGT 10532 ||||| | ||||||| ||||| || ||||| ||||| || |||||||| || |||| Sbjct 12152245 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 12152186 Query 10533 CCCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTG 10592 | | | ||||| |||||||| ||||||||| ||| | ||||||| |||| | |||| Sbjct 12152185 CATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATTTG 12152126 Query 10593 TACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTC 10652 || | || | ||| | |||| | || ||||| | | || || ||| | || || Sbjct 12152125 TATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTAT 12152066 Query 10653 GTGCTTACGATTTTGTATCTCAAGAGATCAGGGCGTCAGAAGATCCTGAATTTGAGACGT 10712 |||| || || || || || || || | | | || | |||||| | |||||||||| | Sbjct 12152065 GTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGACTT 12152006 Query 10713 TCTATACGAAGAATATCCTTCTGAACGAAGGTCTTCGTGCATGGATGGCACCAGTTGACC 10772 || |||| || ||||| ||| | ||||||||| ||||||| |||||||| | | || Sbjct 12152005 TCAATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCTAGATA 12151946 Query 10773 AACCACACGAAAGCTTTGTTTTCCCAGAAGAAGTTCTTCC 10812 | || || |||| | || | |||| || || ||||| || Sbjct 12151945 AGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTACC 12151906 >seq7 Length=29178675 Score = 187 bits (206), Expect = 3e-42 Identities = 204/271 (75%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 10326 TCCAGGGCTTTCATAATTGGACGCTCAATCCCTTCCATATGATGGGAGTTGCTGGTATAC 10385 |||| || |||||||||||||| || || || |||||||||||||| || ||| ||| Sbjct 25949508 TCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTAC 25949449 Query 10386 TGGGAGGGGCGCTCCTATCAGCAATCCACGGAGTCACTGTAGAAAACACACTTTATCAAG 10445 |||| | || || |||| || || || || | ||||||||||| || | | | ||| Sbjct 25949448 TGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAG 25949389 Query 10446 ATGGCGAACAAGCAAACACTTTCAAAGCTTTTGATAGCACTCAAGAAGAAGAGACCTATT 10505 |||| || ||||| || ||| |||||| | ||||||| ||||| || |||| Sbjct 25949388 ATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATT 25949329 Query 10506 CGATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAAC 10565 | ||||| || |||||||| || ||||| || || ||||| |||||||| |||||||| Sbjct 25949328 CAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAAC 25949269 Query 10566 GCTGGCTTCATTTCTTTATGCTGTTTGTACC 10596 | ||| | |||||||||||| | |||||||| Sbjct 25949268 GTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq6 Length=37079636 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/228 (71%), Gaps = 9/228 (4%) Strand=Plus/Minus Query 8272 AATAATCGCTTGTATGTCGGCTGGTTTGGCGTTCTCATGATCCCAACCCTTCTTG-CCGC 8330 || ||||| | || | || |||||||| ||| | ||||| || ||| || ||| |||| Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACC-TTATTGACCGC 27053840 Query 8331 TACAATTTGC---TTCATTACCGCATTCGTTGCTGCTCCTCCTGTGGACATCGACGGCAT 8387 || || | || | || ||||||| ||||| ||||||| || || || || || || Sbjct 27053839 AAC---TTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTAT 27053783 Query 8388 CCGCGAACCAGTTGCTGGATCTCTCATGTACGGTAACAACATCATCTCTGGTGCAGTTGT 8447 || ||| | ||| |||||||||| | || || ||||| || || || ||||| || | Sbjct 27053782 TCGTGAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTAT 27053723 Query 8448 TCCCAGCTCTAACGCAATTGGCCTCCACTTCTACCCCATCTGGGAAGC 8495 ||| | || || |||| | || || ||||| ||||||||||| Sbjct 27053722 TCCTACTTCAGCAGCTATTGTT-TGCATTTTTACCCGATCTGGGAAGC 27053676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 516300710424000