Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq6 91.5 1e-13 seq4 91.5 1e-13 seq7 87.8 2e-12 seq1 84.2 2e-11 seq8 82.4 6e-11 >seq6 Length=37079636 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || ||||| ||||| | || |||||||| |||||| ||| || ||| Sbjct 33565084 ATGCAGATCTTTGTGAAAACCCTCACTGGTAAAACTATTACCCTAGAAGTTGAGAGCTCA 33565143 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| || || ||||| || || | || || ||| Sbjct 33565144 GACACCATTGACAACGTCAAGGCGAAGATTCAAGACAAGGAAGGGATCCCTCCGGACCAA 33565203 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 |||||||| |||||||| || |||||| | || ||| | ||| | || ||||||||| Sbjct 33565204 CAGAGACTCATCTTTGCTGGAAAACAACTTGAGGATGGTCGAACGCTTGCGGATTATAAC 33565263 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||| || ||||| |||| || | | |||| ||||| Sbjct 33565264 ATTCAGAAGGAATCAACCCTGCATTTGGTGCTACGTCTGAGAGGTGGGAT 33565313 >seq4 Length=23266485 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| |||||| | || ||||||| ||||||| ||| || |||| Sbjct 5744347 ATGCAAATCTTTGTGAAAACACTCACTGGTAAAATCATTACCCTAGAAGTTGAGAGTTCA 5744406 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||||| || || || ||||| ||| | || || ||| Sbjct 5744407 GATACAATTGACAACGTCAAGGCGAAGATTCAAGATAAAGAAGGAATCCCTCCTGACCAA 5744466 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 || || || ||||||||||| ||||| | |||||| | ||| | || || || ||| Sbjct 5744467 CAAAGGCTAATCTTTGCGGGTAAACAGCTCGAAGATGGTTGTACTCTTGCGGACTACAAC 5744526 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || ||||| || || ||| |||| | || || |||| || || Sbjct 5744527 ATCCAGAAGGAATCAACCCTCCACTTGGTTCTCAGGTTGAGAGGTGGTAT 5744576 >seq7 Length=29178675 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||||||||| |||||| | || |||||||| |||||| ||| || || Sbjct 2570841 AATGCAAATATTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 2570900 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| | | | ||| ||||| || ||| || || || || | || ||| | Sbjct 2570901 AGACAGCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACGA 2570960 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| || |||||||| || ||||| | || ||| | ||| | | ||||| || Sbjct 2570961 ACAGAGGCTCATCTTTGCTGGTAAACAGCTCGAGGATGGTCGAACCCTTGGGGATTACAA 2571020 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 ||||| || ||||| |||||||| |||| || | || |||| || || Sbjct 2571021 TATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGGAAT 2571071 >seq1 Length=25238555 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/124 (76%), Gaps = 4/124 (3%) Strand=Plus/Minus Query 28647 GACAAAGAGGGAGTGCCCGTAGATCAACAGAGACTTATCTTTGCGGGCAAACAATTGGAA 28706 |||||||||||| | || ||||||||||||| | |||||||| || |||||| | ||| Sbjct 21980305 GACAAAGAGGGAATACCACCAGATCAACAGAGATTGATCTTTGCTGGTAAACAACTTGAA 21980246 Query 28707 GAT--TCTAAAACTATGGCCGATTATAACATTCAAAAAGAATCTACTCTGCACATGGTAT 28764 ||| || | |||| || || || |||||||| ||||| || || || || |||| | Sbjct 21980245 GATGGTCGTACACTA--GCGGACTACAACATTCAGAAAGAGTCGACGCTTCATTTGGTTT 21980188 Query 28765 TAAG 28768 | || Sbjct 21980187 TGAG 21980184 >seq8 Length=40886855 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| || || || | || ||||||||||||||| || ||| ||| Sbjct 1188846 ATGCAGATATTCGTGAAGACCCTCACTGGTAAAACCATTACCCTTGAGGTGGAGAGCTCA 1188787 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGA-GGGAGTGC-CCGTAGATC 28671 || || | | | || | ||| || || ||||| || |||| | | ||| |||| Sbjct 1188786 GACACAATAGACAATGTGAAGGCTAAGATTCAGGACAAGGAAGGGATTCCTCCG--GATC 1188729 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | |||||||||||||| || || || ||| | |||||| | ||| | || ||||| | Sbjct 1188728 AGCAGAGACTTATCTTCGCCGGTAAGCAACTTGAAGATGGAAGGACTCTTGCGGATTACA 1188669 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| || || ||||| ||||| || |||| Sbjct 1188668 ACATCCAGAAGGAATCGACTCTTCATTTGGT 1188638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425260817890209