Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_020486.1 Length=171211 Score E Sequences producing significant alignments: (Bits) Value seq20831 497 1e-135 seq3 414 1e-110 seq7 165 9e-36 seq6 111 2e-19 seq1 111 2e-19 seq2 104 3e-17 >seq20831 Length=3535 Score = 497 bits (550), Expect = 1e-135 Identities = 583/787 (74%), Gaps = 6/787 (1%) Strand=Plus/Minus Query 160876 TTTTGTAACTGGGTCACCAGCACCGACAACCGCCTTTATGTTGGTTGGTTCGGCGTCCTG 160935 || ||||||||| | |||||||| || || || ||||| |||| ||||| || || || Sbjct 784 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 725 Query 160936 ATGATTCC---CTGCTTGCTCGCTGCTACCATTTGTTTCATCATTGCCTTCGTTGGTGCT 160992 ||||| || || ||| ||| || || ||| | | ||| || ||| ||| |||| Sbjct 724 ATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC---GCATTCATTGCTGCT 668 Query 160993 CCCCCTGTGGACATCGACGGCATTCGTGAACCCGTCGCTGGTTCGCTCATGTATGGAAAC 161052 || || || || || || || ||||||||||| || |||| || || | || |||||| Sbjct 667 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 608 Query 161053 AACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCC 161112 || || || || ||||| |||| ||| ||||| ||||| ||| |||| || ||||| Sbjct 607 AATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCG 548 Query 161113 ATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 161172 ||||||||||| ||| | || |||||||| |||||||| ||||||| |||| || Sbjct 547 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 488 Query 161173 GTGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTAC 161232 || | ||||| | |||| | | ||| ||||||||||||||||||||| || | Sbjct 487 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 428 Query 161233 CGTCTGGGAATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGT 161292 |||||||| ||||||||||||||| || ||||| || |||||||| || || || | | Sbjct 427 CGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACT 368 Query 161293 GCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCTCTGGGC 161352 || || ||| || | || || | |||||||| ||| ||||||| |||||||| || Sbjct 367 GCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGA 308 Query 161353 ATCTCTGGTACGTTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTCATGCAC 161412 ||||||||||| ||||||| ||| |||| ||||| || |||||||||||||| |||||| Sbjct 307 ATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCAC 248 Query 161413 CCCTTCCATATGCTCGGCGTAGCAGGTGTGTTTGGCGGTTCTCTGTTCAGTGCAATGCAC 161472 || || || ||| | || ||||| ||||| || ||||| || | || ||||| ||||| Sbjct 247 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCAT 188 Query 161473 GGTTCGCTGGTTACCTCTTCGCTGGTTCGTGAAACCACCGAAAACGAGTCCCAGAACTAT 161532 ||||| |||| || ||| || | | |||||||| ||||| || || || | Sbjct 187 GGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 128 Query 161533 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCTGCCCACGGGTACTTC 161592 ||||||| ||||| ||||||||||| || |||||||| || ||||| || || || || Sbjct 127 GGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTT 68 Query 161593 GGTCGTCTGATTTTCCAATACGCTTCCTTCAACAACTCCCGCTCGCTGCACTTCTTCCTT 161652 || || |||| |||||||| ||| |||||||| || || || | || |||||| | Sbjct 67 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTA 8 Query 161653 GCTGCTT 161659 || |||| Sbjct 7 GCGGCTT 1 >seq3 Length=27950219 Score = 414 bits (458), Expect = 1e-110 Identities = 704/1017 (69%), Gaps = 9/1017 (1%) Strand=Plus/Minus Query 162117 TTTGATGTCCTTGACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGA 162176 |||||| | | || |||||| | || || | || |||||||| || |||||||| Sbjct 12152902 TTTGATATTATGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTGGT 12152843 Query 162177 CTTCTTCTTTTTCCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTC 162236 || | || ||||| ||| ||| | ||| | |||| |||| | || || | || || Sbjct 12152842 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCTTT 12152783 Query 162237 GTCACGAGTTGGTATACTCACGGACTTGCGAGTTCCTATCTTGAGGGTGCAAACTTTCTT 162296 || || ||||||||||| ||| | || ||||||||| | || ||| || ||| Sbjct 12152782 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTAA 12152723 Query 162297 ACTGCGGCAGTTTCTACTCCAGCAGACGCTATGGGTCATTCTCTTCTGCTTCTATGGGGT 162356 || || || |||| ||||| || | | | | |||||| | || | || |||||| Sbjct 12152722 ACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGT 12152663 Query 162357 CCTGAGTCTCAAGGGGACTTCATCCGCTGGTGCCAACTTGGGGGACTCTGGACTTTTGTG 162416 | ||| | ||| | || || | || ||||| ||| | || || |||| | ||||||| Sbjct 12152662 CTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTGTT 12152603 Query 162417 GCGCTCCACGGAGCCTTTGCACTTATAGGTTTCATGCTTCGCCAGTTTGAACTGGCACGA 162476 || ||| |||| || |||||| | ||| |||| ||| | || || |||||||| || ||| Sbjct 12152602 GCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTCGA 12152543 Query 162477 CTTATCGGT---ATT-CGTCCTTACAATGCTATTGCTTTCTCAGGTCCTATTGCTGTATT 162532 || || ||| || ||||| ||||| || || ||||| ||||| || ||||| || Sbjct 12152542 ----TCCGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTT 12152487 Query 162533 CGTTAGTGTTTTTCTTATCTATCCTTTGGGACAATCGTCCTGGTTCTTCGCACCGTCGTT 162592 ||| ||| | || || ||||| |||| ||||| |||||||| || || || Sbjct 12152486 TGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTT 12152427 Query 162593 CGGGGTCGCAGCAATCTTCCGATTCCTGCTCTTCCTCCAAGGGTTCCATAACTGGACGCT 162652 || || || || || || |||||| | || || |||||||||| ||||| |||| | Sbjct 12152426 TGGTGTAGCGGCTATATTTCGATTCATCCTTTTT-TCCAAGGGTTTCATAATTGGATATT 12152368 Query 162653 AAATCCTTTTCACATGATGGGCGTAGCAGGTATCCTTGGTGGTGCATTGCTCTCTGCTAT 162712 || || ||||| |||||||| || | ||| | || || | || |||| | ||||| Sbjct 12152367 GAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTAT 12152308 Query 162713 TCATGGAGTGACAGTTGAAAATACACTGTACGAAGATGGCGAACAAGCAAACACTTTTAA 162772 |||||| | || || |||||||| | | |||||||| || ||||| || || Sbjct 12152307 TCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCG 12152248 Query 162773 AGCATTTGACTCCACACAGGAGGAAGAAACGTATTCGATGGTTACTGCGAACCGCTTCTG 162832 || ||| || | || || | |||||||| ||||| ||||| || || |||||||| || Sbjct 12152247 TGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTG 12152188 Query 162833 GTCACAGATTTTCGGTATTGCTTTTAGTAACAAGCGTTGGTTGCATTTCTTTATGCTCTT 162892 |||| | | || || |||||||| || || |||||||| ||||||| |||| | || Sbjct 12152187 GTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATT 12152128 Query 162893 TGTTCCCGTCATGGGTCTCTGGACAAGTTCTATCGGTATTATTGGACTCGCTCTCAATCT 162952 ||| | || | ||| | |||| ||| || | || | | || || ||| | || || Sbjct 12152127 TGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCT 12152068 Query 162953 TCGTGCTTACGACTTTGTATCTCAAGAAGTTCGTGCGGCAGAAGACCCTGAGTTTGAGAC 163012 |||| || ||||| || || || ||| ||||| || ||||| | | |||||||| Sbjct 12152067 ATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGAC 12152008 Query 163013 GTTCTATACAAAGAACATTCTTCTGAATGAAGGACTTCGAGCATGGTTAGCACCAGTGGA 163072 ||| |||| || || |||||| | || ||||| |||| || ||| | || | | || Sbjct 12152007 TTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCTAGA 12151948 Query 163073 CCAACCTCATGAGAACTTTGTGTTCCCTGAAGAGGTCTTGCCAAGAGGCAACGCTCT 163129 | |||||||| ||| || | |||| ||| ||||| | ||| | || |||||||| Sbjct 12151947 TAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTACCACGTGGAAACGCTCT 12151891 >seq7 Length=29178675 Score = 165 bits (182), Expect = 9e-36 Identities = 199/271 (73%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 162628 TCCAAGGGTTCCATAACTGGACGCTAAATCCTTTTCACATGATGGGCGTAGCAGGTATCC 162687 |||||||||| ||||| ||||| || || ||||| |||||||| || || ||| | | Sbjct 25949508 TCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTAC 25949449 Query 162688 TTGGTGGTGCATTGCTCTCTGCTATTCATGGAGTGACAGTTGAAAATACACTGTACGAAG 162747 | || | || |||| | ||||||||||| | || || |||||||| | | |||| Sbjct 25949448 TGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAG 25949389 Query 162748 ATGGCGAACAAGCAAACACTTTTAAAGCATTTGACTCCACACAGGAGGAAGAAACGTATT 162807 |||| || ||||| || || || ||| || | || || | |||||||| |||| Sbjct 25949388 ATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATT 25949329 Query 162808 CGATGGTTACTGCGAACCGCTTCTGGTCACAGATTTTCGGTATTGCTTTTAGTAACAAGC 162867 | ||||| || || |||||||| |||||||| || || || |||||||| || || | Sbjct 25949328 CAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAAC 25949269 Query 162868 GTTGGTTGCATTTCTTTATGCTCTTTGTTCC 162898 ||||||| |||||||||||| | ||||| || Sbjct 25949268 GTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq6 Length=37079636 Score = 111 bits (122), Expect = 2e-19 Identities = 162/225 (72%), Gaps = 7/225 (3%) Strand=Plus/Minus Query 160903 AACCGCCTTTATGTTGGTTGGTTCGGCGTCCTGATGATTCC---CTGCTTGCTCGCTGCT 160959 || || ||||| |||| ||||| || || |||||||||| || ||| ||| || Sbjct 27053895 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACT 27053836 Query 160960 ACCATTTGTTTCATCATTGCCTTCGTTGGTGCTCCCCCTGTGGACATCGACGGCATTCGT 161019 || ||| || || || || ||| ||| | |||| || || || || || || |||||| Sbjct 27053835 TCCGTTT--TTAAT-ATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGT 27053779 Query 161020 GAACCCGTCGCTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCT 161079 ||| | || |||| || || | ||||||||||| || || || ||||| |||| ||| Sbjct 27053778 GAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCT 27053719 Query 161080 TCTTCTAACGCTATCGGTCTGCACTTCTACCCCATCTGGGAAGCA 161124 |||| ||||| || |||| || ||||| |||||||||||| Sbjct 27053718 ACTTCAGCAGCTAT-TGTTTGCATTTTTACCCGATCTGGGAAGCA 27053675 >seq1 Length=25238555 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 158325 GTGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTA 158384 ||||||||| ||| ||| |||| ||||||||||| ||||| || |||| | ||| Sbjct 6597790 GTGTGAAGAAGACGTCTACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGACTTGCCTTA 6597849 Query 158385 CTCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGA 158444 ||| |||||||| || |||| || || || || ||| ||||||||||| |||| || Sbjct 6597850 CTCATGCCGTGCTGGTTCTTGCTCTAGCTGCGCCGGTAAAGTCGTCTCTGGCTCCGTTGA 6597909 Query 158445 CCAAAGCGACCAGTCCTTCCTGGACGATGACCAAAT 158480 ||| |||||| |||| ||||||| |||||||| Sbjct 6597910 CCAGTCCGACCAAAGCTTCTTGGACGACGACCAAAT 6597945 >seq2 Length=28351830 Score = 104 bits (114), Expect = 3e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 158326 TGTGAAGACGACCAGTACATCCTTGACGCAGCTGAGGAAGCGGGTGTCGAACTCAATTAC 158385 || || |||||| ||| |||| ||||||||||| ||||| || |||| | |||| Sbjct 3660675 TGCGACGACGACGTTTACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTGCCTTAC 3660616 Query 158386 TCGTGCCGTGCAGGCGCTTGTTCGTCGTGTGCGGGAAAACTCGTCTCTGGCACCGTAGAC 158445 || |||||||| || | ||||| ||||| || ||| | ||||| | || || Sbjct 3660615 TCTTGCCGTGCTGGTTCATGTTCAAGCTGTGCAGGTAAAGTTAAGTCTGGATCTGTTGAT 3660556 Query 158446 CAAAGCGACCAGTCCTTCCTGGACGATGACCAAATCGATTCTGGTTTCATTCTGACTTGT 158505 ||| |||||| ||||| || ||||| || || | | || || |||| |||||| Sbjct 3660555 CAATCTGACCAGAGTTTCCTCGATGATGAACAGATTGCTGAAGGATTTGTTCTCACTTGT 3660496 Query 158506 GTTTCTTATCCTACAAGTGATTGTGTGATTGAGACTGACAAGGAAGAGGA 158555 | | |||||||||| |||| | ||||||||| |||| ||||| || Sbjct 3660495 GCTGCTTATCCTACCTCTGATGTTACCATTGAGACTCACAAAGAAGAAGA 3660446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547557056406360