Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq20831 437 3e-118 seq6 111 5e-20 >seq20831 Length=3535 Score = 437 bits (484), Expect = 3e-118 Identities = 572/787 (73%), Gaps = 6/787 (1%) Strand=Plus/Plus Query 18034 AAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAGATGA 18093 |||| || ||||||||||||| | | |||||| || |||||||| |||||||| | Sbjct 1 AAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCA 60 Query 18094 GTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAAATT 18153 || ||||| || |||||||| || ||||| || || || ||||||||||| || ||| Sbjct 61 ATCGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATC 120 Query 18154 TATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAACAA 18213 | || || | || ||| ||| || || ||||| || || | ||||| || | Sbjct 121 TGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCA 180 Query 18214 GACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATAT 18273 || ||||||||| ||||| | || |||||||| || || ||||| | ||| | Sbjct 181 AGGAACCATGCATAGCACTAAATAAGGAGCCGCCGAATACACCAGCTACACCTAACATGT 240 Query 18274 GGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTAC 18333 | || || |||||||| || ||||| || || |||||||| | ||| || |||||||||| Sbjct 241 GAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTAC 300 Query 18334 CGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGA 18392 | || || ||||||||||||||||| ||||| ||||| |||| || |||| | ||| Sbjct 301 CAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAAATCAAGA 360 Query 18393 AATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCA 18450 || || || || |||||||| || || || ||||| |||||| |||||| || |||| Sbjct 361 AA-AC--AGCAGTTGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCA 417 Query 18451 TACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAA 18510 |||| || | ||||||||||||| | || ||||| ||| || | || | | || Sbjct 418 TACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAA 477 Query 18511 AGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAG 18570 |||| | ||||| |||| ||| || || ||||| |||| ||| || || | || ||||| Sbjct 478 AGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAG 537 Query 18571 CTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTG 18630 |||||||||| ||||| || || | ||| || || ||| | || | || || |||| Sbjct 538 CTTCCCAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTG 597 Query 18631 ATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGT 18690 | || || |||||||| || || | | ||| || ||||| |||||||||||||| || | Sbjct 598 AAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATAT 657 Query 18691 CAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAG 18750 | || ||||||||||||| ||||| || | ||| | | || |||||| || | | || Sbjct 658 CTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAG 717 Query 18751 GGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGT 18810 ||||||| | || |||||||| || | ||| || || || | || || || | ||||| Sbjct 718 GGATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCAGTGCTGGTTATCCAGT 777 Query 18811 CACATAA 18817 ||| || Sbjct 778 TACAGAA 784 >seq6 Length=37079636 Score = 111 bits (122), Expect = 5e-20 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 18570 GCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCT 18629 ||||||||||| ||||| || || | || || || || | || | || || ||| Sbjct 27053676 GCTTCCCAGATCGGGTAAAAATGCAAACA-ATAGCTGCTGAAGTAGGAATAATGGCACCT 27053734 Query 18630 GATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATG 18689 || || || ||||||||||| || | | ||| || |||| |||||||||||||| || Sbjct 27053735 GAAATAATATTGTTTCCATAAAGAAGAGATCCAGAAACAGATTCACGAATACCATCAATA 27053794 Query 18690 TCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCA 18749 || || ||||||| ||||| ||||| || ||| | | || |||||| || | | | Sbjct 27053795 TCTACTGGAGGAGTAGCAATGAATGCGATATTAAAAACGGAAGTTGCGGTCAATAAGGTA 27053854 Query 18750 GGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACT 18799 || ||||| | || |||||||| || | ||| || || || ||| |||| Sbjct 27053855 GGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT-TTTTTACT 27053903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151268498123474