Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_020837.1 Length=198013 Score E Sequences producing significant alignments: (Bits) Value seq3 462 3e-125 seq20831 426 2e-114 seq7 174 2e-38 seq6 91.5 2e-13 seq1 86.0 8e-12 >seq3 Length=27950219 Score = 462 bits (512), Expect = 3e-125 Identities = 716/1018 (70%), Gaps = 11/1018 (1%) Strand=Plus/Plus Query 101710 AGAGCGTTGCCTCTTGGCAATACCTCTTCAGGAAATACAAAGTTTTCATGCGGTTGATCG 101769 |||||||| || | ||| | ||||| ||| | |||| || ||||||||| || | ||| Sbjct 12151891 AGAGCGTTTCCACGTGGTAGAACCTCCTCAAGGAATATAAGGTTTTCATGAGGCTTATCT 12151950 Query 101770 ACTGGTGCCAACCATGCACGTAGACCTTCATTCAATAGGATGTTCTTTGTGTAGAACGTC 101829 | | |||| ||| ||||| | |||||| || || || || || || || | ||| ||| Sbjct 12151951 AGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATTGAAAGTC 12152010 Query 101830 TCGAACTCTGGATCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCACGAAGG 101889 || || | | |||||| ||||| | | | || ||||| || |||||||| |||| ||| Sbjct 12152011 TCAAATTTCGAATCTTCCGCTGCACGGGTTTCCTGGGAAACGAAGTCATAGGCACATAGG 12152070 Query 101890 TTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCACAGACCCATAACAGGAACAAAG 101949 || | ||| || || | | || | | ||| |||| | ||| | || | ||||| Sbjct 12152071 TTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGATACAAAT 12152130 Query 101950 AGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATTTGAGACCAG 102009 | |||| ||||||| ||||| | ||||| ||| |||| ||||||| || ||||| Sbjct 12152131 AACATATAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGAATTATGACCAA 12152190 Query 102010 AAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCGAATGCTTTG 102069 || ||||| || || |||||||||||||| ||||| |||| || | | || || | Sbjct 12152191 AAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCACGG 12152250 Query 102070 AAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACACCGTGGATT 102129 || || ||||| ||||||||||||| | | ||| || || ||||| |||| || || Sbjct 12152251 AATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCATGAATA 12152310 Query 102130 GCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAATGGGTTGAGC 102189 || | ||||| || | || || | ||| | || ||||||||||| |||||||| | Sbjct 12152311 GCGCATAGCAGAGCGGCGCCGAGTACACCGACGACTCCCATCATATGAAATGGGTTCAAT 12152370 Query 102190 GTCCAGTTATGGAAGCCCTGTAGGAAGAGTAGGAATCTAAATATCGCTGCAACACCAAAC 102249 |||| ||||| || || || | || || | ||||| |||||| || || |||||||| Sbjct 12152371 ATCCAATTATGAAACCCTTGGA-AAAAAGGATGAATCGAAATATAGCCGCTACACCAAAA 12152429 Query 102250 GAGGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATAGATGAGAAACACACTGACAAAA 102309 |||||||||||||||| || || || || ||||| || || | ||| |||||| Sbjct 12152430 CTAGGCGCAAAGAACCAACCAGATTGACCCAGTGGATAAATTAGGAGGACAAAAACAAAA 12152489 Query 102310 ACAGCGATAGGCCCAGAGAACGCAATAGCATTGTACGGACGAATTCCAATTAACCTAGCC 102369 |||||||| || |||||||| || || ||||| || || || | | || | | ||| Sbjct 12152490 ACAGCGATTGGACCAGAGAATGCGATTGCATTATAAGGGCGCAATTGAACGGATCGAGCA 12152549 Query 102370 AACTCGAATTGACGAAGCATGAAACCAATGAGGGCAAATGCACCGTGGAGAGCCACAAAA 102429 | || |||||||| | ||| |||| || | ||||| || |||| |||||| |||||| Sbjct 12152550 AGTTCAAATTGACGTAACATAAAACATATTAATGCAAAAGCGCCGTAGAGAGCAACAAAA 12152609 Query 102430 GCCCAGAGTCCCCCAAGTTGGACCCACCTGACGAAATCTCCTTGAGCTTCAGGACCCCAA 102489 ||| |||| || || | ||| ||| | ||||||| ||| |||||| ||||||| Sbjct 12152610 GCCTAGAGACCGCCTAATTGACACCAACGAGTAAAATCTCTTTGTGCTTCAAGACCCCAC 12152669 Query 102490 AGTAGAAGAAGAGAATGACCCATAGAGTCAGCAGGCGTTGACACAGCAGCTGTAAGGAAA 102549 |||| | | |||||| | | | | |||||| || || | ||||| || ||| Sbjct 12152670 AGTAACAACAAAGAATGTGCTAAACTATTAGCAGGAGTCGAAATGGCAGCGGTTTAAAAA 12152729 Query 102550 TTAGCACCTTC---AAGGTAACTAGACGCAAGCCCGTGGGTATACCAGGAAGTAGCAAAC 102606 || |||||| | | ||||| || | || || |||||||| ||||| |||| Sbjct 12152730 TTGCAACCTTCTAAATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTTACAAAG 12152786 Query 102607 GTCGTGCCAGTAAGCCAGCCCCCAATTGCGAGATAAGCAGTGGGAAAAAGAAGTAGTCCA 102666 || | || || | ||| |||| | |||| ||| ||| ||||| || | ||| ||| Sbjct 12152787 GTTGCACCTGTGAACCAATCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATAGACCA 12152846 Query 102667 GACCAACCCACAAAGACAAAGC--GATCTCGTTTAATCCAGTCATCCAGGATGTCAAA 102722 |||||||| ||||| ||||||| | ||| | | ||||||||||| || ||||| Sbjct 12152847 GACCAACCTACAAAAACAAAGCAGTACCTCCGT--AACCAGTCATCCATAATATCAAA 12152902 >seq20831 Length=3535 Score = 426 bits (472), Expect = 2e-114 Identities = 536/731 (73%), Gaps = 6/731 (1%) Strand=Plus/Plus Query 103403 GAGTTGTTGAATGATGCGTATTGGAAGATCAAACGACCGAAGTAACCATGAGCGGCTACG 103462 || |||||||| || |||||||||||||| || || || ||||||||||| ||||| Sbjct 30 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACA 89 Query 103463 ATGTTGTATGTCTCTTCCTCTTGTCCGAACTTGTAACCATAGTTTTGAGATTCAGTTTCA 103522 |||||||| || ||||| ||||||||||| ||||||| | || ||||||| |||| Sbjct 90 ATGTTGTAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 149 Query 103523 GTCGTCTCAC-GAACCAGCGAGGACGTAACAAGCGAACCGTGCATAGCACTGAACAGTGA 103581 || || || | || | | | || | || |||| ||||| ||||||||||| || | || Sbjct 150 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAG-GAACCATGCATAGCACTAAATAAGGA 208 Query 103582 ACCACCGAAGACTCCAGCAACGCCCAGCATGTGGAAGGGGTGCATGAGAATGTTATGTTC 103641 || ||||| || ||||| || || | |||||| || |||||||| |||||||| || || Sbjct 209 GCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 268 Query 103642 GGCTTGGAAGACCAGCATGTAGTTGAAGGTTCCCGAAATACCCAAAGGCATAGCATCGGA 103701 || ||||| || | ||| ||||||| || || || || || | ||||||| |||| || Sbjct 269 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 328 Query 103702 GAACGAACCTTGACCAAAGGGGTAGACCAAGAATACTGCGGACGCAGCCGCAACAGGAGC 103761 || |||||||||| ||||| | |||||| || || | ||||| ||||||||||| Sbjct 329 AAAACTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAGC 388 Query 103762 AGAGTATGCGACACAGATCCAGGGGCGCATGCCCAGACGGTAGGACAATTCCCACTCACG 103821 || ||||| ||| ||||| || ||||| ||||||||| | | |||||||||||| Sbjct 389 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 448 Query 103822 TCCCATATATGCATAGATGCCAATGAGGAAGTGGAATACTACAAGTTGGAAAGGACCACC 103881 |||||||| | | |||| | ||||| | || | |||| ||||||| || Sbjct 449 ACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCC 508 Query 103882 GTTATACAGCCACTCATCAAGAGATGCTGCTTCCCAAATGGGATAGAAGTGAAGACCAAT 103941 ||| || ||||| ||||||| ||||| |||||||| || || || || || | |||||| Sbjct 509 GTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAAT 568 Query 103942 TGCGTTGGAGGAG--GGAACAACTGCACCAGAGATGATGTTGTTACCGTACATGAGTGAA 103999 || || || || |||| || ||||| || || || ||||| ||||| | || || Sbjct 569 AGC--TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGAT 626 Query 104000 CCAGCGACGGGTTCACGAATGCCGTCGATATCGACGGGAGGTGCTGCTACGAAAGCAACG 104059 |||| || ||||||||||| || || ||||| || ||||| || || | ||| || | Sbjct 627 CCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATA 686 Query 104060 ATGAAGCAGATGGTTGCCGCCAACAGAGTTGGGATCATCAGCACACCGAACCAACCAACA 104119 || || | ||||| | ||| | || |||||||||| ||||| ||||| |||| Sbjct 687 ATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATG 746 Query 104120 TAGAGACGGTT 104130 || ||||| || Sbjct 747 TAAAGACGATT 757 >seq7 Length=29178675 Score = 174 bits (192), Expect = 2e-38 Identities = 200/269 (74%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 101941 GGAACAAAGAGCATAAAGAAATGCAACCACCTCTTATTACTAAATGCAATACCAAAGATT 102000 || ||||| | |||||||||||| ||||| | ||||| ||| |||| ||||||||| Sbjct 25949238 GGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATT 25949297 Query 102001 TGAGACCAGAAACGGTTTGCTGTAACCATTGAATAAGTCTCTTCCTCTTGTGTGGAATCG 102060 || ||||| || ||||| || || |||||||||||||| ||||| |||| || | | Sbjct 25949298 TGTGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTA 25949357 Query 102061 AATGCTTTGAAAGTGTTTGCTTGATCACCATCTTCATACAGAGTGTTCTCCACAGTGACA 102120 || || ||| || ||||| ||||||||||||| | | ||| || || ||||| || Sbjct 25949358 AAAGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCA 25949417 Query 102121 CCGTGGATTGCTGACAGCAGTGCTCCTCCCAGGATACCTGCAACACCCATCATATGGAAT 102180 || || || || | ||||| || | ||||| | ||| || || ||||||||||| ||| Sbjct 25949418 CCATGAATAGCGCATAGCAGAGCGGCGCCCAGTACACCGGCGACTCCCATCATATGAAAT 25949477 Query 102181 GGGTTGAGCGTCCAGTTATGGAAGCCCTG 102209 ||||| ||||| ||||| || || || Sbjct 25949478 GGGTTCTATGTCCAATTATGAAACCCTTG 25949506 >seq6 Length=37079636 Score = 91.5 bits (100), Expect = 2e-13 Identities = 131/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 102824 GGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCATCCAGAAAGGAT 102883 ||||| ||||| || |||| ||| |||| || | |||| ||| || || || || Sbjct 23704908 GGGTAAGCCACACAAGTCAAGACATAACCATTCTCAAAGTGATGGTCCTCAAGGAACGAA 23704849 Query 102884 TGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTAGAACACGCACCA 102943 ||| || || || | || || ||||||||||| ||||| |||||||||||| Sbjct 23704848 CCATCAGACTGGTCAACGTTGCCTTTCTCGATCTTACCAGCGCAAGTGGAACACGCACCA 23704789 Query 102944 GCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCTAGAATATATTGA 103003 || | || || ||||||| ||||| ||||| || ||||| || || | || ||||| Sbjct 23704788 GCTCTGCAAGAGTAAGGCAAGTCAACTCCTGCCTCTTCAGCTGCATCCAAGATGTATTGG 23704729 Query 103004 TCATC 103008 ||||| Sbjct 23704728 TCATC 23704724 >seq1 Length=25238555 Score = 86.0 bits (94), Expect = 8e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 102812 ACATCCGAAGTTGGGTATGCCACGCAGGTCAGAACAAAACCTGCTTCTAGTTGATCGTCA 102871 ||||| ||||||||||| || || ||||| | ||| | ||| ||| | ||| ||||| Sbjct 6597993 ACATCAGAAGTTGGGTAAGCGACACAGGTTAAGACATAGCCTTCTTTCATTTGGTCGTCG 6597934 Query 102872 TCCAGAAAGGATTGATCTTCTTGATCTACAGTACCCGATTCAATCTTACCAGCACAAGTA 102931 |||| ||| ||| || || || || | || || | | ||||| || || || Sbjct 6597933 TCCAAGAAGCTTTGGTCGGACTGGTCAACGGAGCCAGAGACGACTTTACCGGCGCAGCTA 6597874 Query 102932 GAACACGCACCAGCACGACAGGAATAAGGCAGATCAACACCTGCTTCATCAGCAGCGTCT 102991 || || | ||||||||| || || ||||||| || | || ||||| ||||| ||||| Sbjct 6597873 GAGCAAGAACCAGCACGGCATGAGTAAGGCAAGTCGATTCCGGCTTCTTCAGCTGCGTCG 6597814 Query 102992 AG 102993 || Sbjct 6597813 AG 6597812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633293683672680