Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq20831 398 2e-106 >seq20831 Length=3535 Score = 398 bits (440), Expect = 2e-106 Identities = 554/774 (72%), Gaps = 2/774 (0%) Strand=Plus/Plus Query 21681 AAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAA 21740 |||||||| | | ||| ||||| || || ||||||||||||||||| | || |||||| Sbjct 12 AAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAA 71 Query 21741 TAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAG 21800 || || |||||||| ||||| |||||||| ||||| ||||| || || ||||||| | Sbjct 72 TAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCA 131 Query 21801 TTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGC 21860 || || | | ||| || || || | || | || || |||| | ||| ||| Sbjct 132 TTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGC 191 Query 21861 ATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGC 21920 |||||| || || || || ||||| || || ||||| | ||||||||| || ||| Sbjct 192 ATAGCACTAAATAAGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGC 251 Query 21921 ATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCC 21980 |||||||| ||||||||||||||||| || | ||| ||||||| || || || || || Sbjct 252 ATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCT 311 Query 21981 AAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTC 22040 | |||||| ||||||||||| || || |||| || |||| | ||| |||||||| Sbjct 312 AGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTT 371 Query 22041 GCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAG 22100 ||||| || |||||||| || || |||||| ||||| || | ||| || || || | Sbjct 372 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 431 Query 22101 CTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTG 22160 |||||||||||||| || ||||| ||| | || |||| | ||||| | || | Sbjct 432 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 491 Query 22161 AGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGG 22220 |||| | |||||||||||||| ||||||||||||| | ||||||||||| || ||| Sbjct 492 AGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGG 551 Query 22221 TAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTA 22280 || || || | || || || | | |||| | ||| ||||| || || ||||| Sbjct 552 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 611 Query 22281 CCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCG 22340 || || | || || |||| || ||||| || || ||||| || || || || || || Sbjct 612 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 671 Query 22341 CCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGAC 22399 ||| || |||||||||||| | || |||| ||| ||| | || ||||| | || Sbjct 672 GCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAAC 730 Query 22400 TCCGAACCATCCTACATAAAGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453 || |||||||| | |||||||| || | ||| ||| | |||| ||| || Sbjct 731 ACCAAACCATCCAATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 784 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146159783434380