Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12]
27,771 sequences; 308,032,609 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq20831 398 2e-106
>seq20831
Length=3535
Score = 398 bits (440), Expect = 2e-106
Identities = 554/774 (72%), Gaps = 2/774 (0%)
Strand=Plus/Plus
Query 21681 AAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAA 21740
|||||||| | | ||| ||||| || || ||||||||||||||||| | || ||||||
Sbjct 12 AAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAA 71
Query 21741 TAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAG 21800
|| || |||||||| ||||| |||||||| ||||| ||||| || || ||||||| |
Sbjct 72 TAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCA 131
Query 21801 TTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGC 21860
|| || | | ||| || || || | || | || || |||| | ||| |||
Sbjct 132 TTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGC 191
Query 21861 ATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGC 21920
|||||| || || || || ||||| || || ||||| | ||||||||| || |||
Sbjct 192 ATAGCACTAAATAAGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGC 251
Query 21921 ATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCC 21980
|||||||| ||||||||||||||||| || | ||| ||||||| || || || || ||
Sbjct 252 ATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCT 311
Query 21981 AAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTC 22040
| |||||| ||||||||||| || || |||| || |||| | ||| ||||||||
Sbjct 312 AGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTT 371
Query 22041 GCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAG 22100
||||| || |||||||| || || |||||| ||||| || | ||| || || || |
Sbjct 372 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 431
Query 22101 CTAAGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTG 22160
|||||||||||||| || ||||| ||| | || |||| | ||||| | || |
Sbjct 432 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 491
Query 22161 AGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGG 22220
|||| | |||||||||||||| ||||||||||||| | ||||||||||| || |||
Sbjct 492 AGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGG 551
Query 22221 TAGAAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTA 22280
|| || || | || || || | | |||| | ||| ||||| || || |||||
Sbjct 552 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 611
Query 22281 CCATACAACAGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCG 22340
|| || | || || |||| || ||||| || || ||||| || || || || || ||
Sbjct 612 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 671
Query 22341 CCAACAAAGGCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGAC 22399
||| || |||||||||||| | || |||| ||| ||| | || ||||| | ||
Sbjct 672 GCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAAC 730
Query 22400 TCCGAACCATCCTACATAAAGACGGTTATTAGTAGAGGTGACCCAGGAACAAAA 22453
|| |||||||| | |||||||| || | ||| ||| | |||| ||| ||
Sbjct 731 ACCAAACCATCCAATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 784
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146159783434380
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |