Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq20831 405 6e-108 seq3 260 2e-64 seq7 114 1e-20 seq6 100 3e-16 >seq20831 Length=3535 Score = 405 bits (448), Expect = 6e-108 Identities = 539/746 (72%), Gaps = 2/746 (0%) Strand=Plus/Plus Query 124253 GCTAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAATGAAGCATACTGGAAGATAAGACGA 124312 |||| |||||| || | | | || |||||||| |||||| |||||||| | || Sbjct 6 GCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGG 65 Query 124313 CCAAAGTAACCGTGTGCTGCTACTATGTTGTATGTTTCTTCTTCTTGTCCGAACTTATAA 124372 ||||| ||||| || || ||||| |||||||| |||||||||||||||||||| | ||| Sbjct 66 CCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATCTGTAA 125 Query 124373 CCATAGTTCTGTGACTCTTGCTCTGTTGTTTCTCTGATTAGAGAAGATGTAACAAGAGAA 124432 || | || || || | ||||| ||||| ||||| | | ||| || || | ||| Sbjct 126 CCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAA 185 Query 124433 CCATGCATTGCTGAGAATAAAGATCCTCCGAACATTCCTGCTACTCCTGCCATGTGGAAA 124492 |||||||| || ||||| || || ||||| | || ||||| ||| |||||| || Sbjct 186 CCATGCATAGCACTAAATAAGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 245 Query 124493 GGATGCATTAGAATGTTATGCTCTGCTTGGAAAACGAACATAAAGTTGAAAGTACCTGAG 124552 || ||||| |||||||| ||||| || ||||| || | |||||||||||||||||| ||| Sbjct 246 GGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAG 305 Query 124553 ATACCAAGTGGCATACCATCAGAGAATGAACCCTGACCAAATGGGTATACTAAGAATACA 124612 || || || |||||||||||||| || || ||||||| |||||| | ||||| ||| Sbjct 306 ATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAAACA 365 Query 124613 GCGAATGCAGCAGATACTGGTGCTGAATAAGCAACACAGATCCAAGGACGCATTCCTAAT 124672 || |||||| | || || |||||||| |||||| |||||||||||||| || | Sbjct 366 GCAGTTGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGA 425 Query 124673 CTGTATGATAGTTCCCACTGTCTTCCCATGTATGCTGAAATACCAATAAGGAAGTGGAAA 124732 | | | |||||||||| | ||||| || | | ||||| | ||||| | | Sbjct 426 CGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGA 485 Query 124733 ATTACCAACTGATAAGGACCACCATTATACAACCATTCATCAACAGTTGCTGCTTCCCAG 124792 | | | | ||||||||| || || || | |||||||||||| | ||| ||||||||| Sbjct 486 ACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAG 545 Query 124793 ATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACCAGAGATGATG 124852 || ||||| || || | || ||||| || | |||| || ||||| || || || Sbjct 546 ATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATA 605 Query 124853 TTGTTACCATATAAGAA-AGAACCCGCTACTGGTTCTCTGATTCCGTCGATATCGACAGG 124911 ||||| || || ||||| ||| || | || ||||| | || || || ||||| || || Sbjct 606 TTGTTTCCGTA-AAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGG 664 Query 124912 AGGTGCTGCAATAAATGCAACGATGAAACATGCTGCTGCTGTGAGTAAGCATGGAATCAT 124971 ||| || ||||| ||||| | || ||| | | ||| || | |||| || ||||| Sbjct 665 AGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCAT 724 Query 124972 TAGAACACCAAACCAACCAACATAAA 124997 | |||||||||||| |||| |||| Sbjct 725 CAAAACACCAAACCATCCAATGTAAA 750 >seq3 Length=27950219 Score = 260 bits (288), Expect = 2e-64 Identities = 681/1038 (66%), Gaps = 22/1038 (2%) Strand=Plus/Plus Query 122866 TTAAAGTGCGTTACCTCTTGGTAACACTTCTTCTGGGAATACAAAATTCTCATGCGGTTG 122925 |||||| ||||| || | ||||| || || || |||||| || || ||||| || | Sbjct 12151887 TTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAAGGAATATAAGGTTTTCATGAGGCTT 12151946 Query 122926 GTCAACAGATGACATCCATGCTCTCATGCCTTCATTAAGAAGAATGTTCTTCGTATAGAA 122985 || | || | |||||| || | || ||||| || | |||||| || || |||| ||| Sbjct 12151947 ATCTAGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATTGAA 12152006 Query 122986 AGTCTCGAACTCTGGGTCTTCTGCTGCTCTTATCTCTTGAGATACAAAGTCGTATGCTCT 123045 |||||| || | | ||||| ||||| | | || || || || ||||| || || | Sbjct 12152007 AGTCTCAAATTTCGAATCTTCCGCTGCACGGGTTTCCTGGGAAACGAAGTCATAGGCACA 12152066 Query 123046 GAGGTTAAGTGCTAGACCTACGATACCTATAGATGATGTCCACATACCCATGACAGGAAC 123105 ||||| | ||||| || || | || | || |||| | ||| | || | || Sbjct 12152067 TAGGTTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGATAC 12152126 Query 123106 GAACAACATAAGGAAGTGTAAGAATCTTTTGTTAGAAAATGCGATACCAAATATCTGTGA 123165 || |||||| ||| ||||| | | ||| || ||||| || | ||||| | | ||| Sbjct 12152127 AAATAACATATAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGAATTATGA 12152186 Query 123166 CCAGAATCTGTTCGCTGTAATCATACTATAAGTTTCTTCTTCCTGTGTAGGATCGAATGC 123225 ||| || | ||| || || | ||| |||||||||||| | || || || | || || Sbjct 12152187 CCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGC 12152246 Query 123226 TCTGAAAGTTGTAGATTGAATCTTACCTTCAGTATATTGTGATGTGTCTTCATACAATGT 123285 | ||| |||| ||| | || ||| || ||||| | || || Sbjct 12152247 ACGGAA---TGTAT-TTGCA-----CCATCACCAT------------CTTCAAATAAAGT 12152285 Query 123286 GTTCTGCACTGTTGCACCATGAATGGCACATAGTAATGCTCCACCTAGTATTCCTGCAAC 123345 || | || || ||||||||||| || ||||| | || | || |||| || | || Sbjct 12152286 ATTTTCTACAGTAGCACCATGAATAGCGCATAGCAGAGCGGCGCCGAGTACACCGACGAC 12152345 Query 123346 ACCCATCATGTGAAATGGATTCAATGTAATGTTGTGGAAACCTTGTATGAATAAGATATA 123405 |||||||| |||||||| |||||| | || || || ||||| | || | ||| | Sbjct 12152346 TCCCATCATATGAAATGGGTTCAATATCCAATTATGAAACCCTTGGAAAAA-AGGATGAA 12152404 Query 123406 ACGAAAGATTGCTGCGACACCGAATGATGGTGCGAAGAACCAACTGTGCTGACCTAGTGG 123465 ||||| || || || ||||| || || || |||||||||| ||||| ||||| Sbjct 12152405 TCGAAATATAGCCGCTACACCAAAACTAGGCGCAAAGAACCAACCAGATTGACCCAGTGG 12152464 Query 123466 ATAGATCAGAAAGATGCTAGTGAAGACTGCGATAACAGCAGAGAATGCGAGTGCGTTGTA 123525 ||| || || | || | || || ||||| | |||||||||||| ||| || || Sbjct 12152465 ATAAATTAGGAGGACAAAAACAAAAACAGCGATTGGACCAGAGAATGCGATTGCATTATA 12152524 Query 123526 AGGTCTAATGCCTACAAGTCCTGCGATCTCAAATTGTCTGAGCATGAAACCTATGAGTCC 123585 ||| | | || || || | |||||||| | | ||| |||| ||| | | | Sbjct 12152525 AGGGCGCAATTGAACGGATCGAGCAAGTTCAAATTGACGTAACATAAAACATATTAATGC 12152584 Query 123586 AAAGACTCCATGTAATGCTACAAAGTTCCATAGACCTCCGAGTTGTAACCAACGAACGAA 123645 ||| | || | | || ||||| | | ||||| || | ||| |||||||| || Sbjct 12152585 AAAAGCGCCGTAGAGAGCAACAAAAGCCTAGAGACCGCCTAATTGACACCAACGAGTAAA 12152644 Query 123646 TGATCCTTGTGCTTCAGGTCCCCAAAGGAACATGAGACTATGACCCATTGCGTCACCAGG 123705 || |||||||||| | ||||| || |||| | | ||| | | | | |||| Sbjct 12152645 ATCTCTTTGTGCTTCAAGACCCCACAGTAACAACAAAGAATGTGCTAAACTATTAGCAGG 12152704 Query 123706 TGTGGAGACTGCTGCTGTTAAGAAGTTTGCTCCCTCAAGATATGAAGATGCAATACCATG 123765 || || | || || ||| | || || || || | ||| ||| || | ||||| Sbjct 12152705 AGTCGAAATGGCAGCGGTTTAAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATG 12152764 Query 123766 TGTATACCATGATGTAACGAAGGTAGTTCCTAAGAACCAACCACCGATTGATAGATACGC 123825 ||||||||||| || || ||||| | ||| ||||||| | || | | | ||| || Sbjct 12152765 AGTATACCATGAAGTTACAAAGGTTGCACCTGTGAACCAATCCCCTAAAGCGAAATAGGC 12152824 Query 123826 ACAAGGCAGAAGTAAAAGACCAGACCATCCTATGAATACAAAACGATCTCTCTTTAACCA 123885 |||||| | || || ||||||||||| |||| || ||||| | | ||| |||||| Sbjct 12152825 ACAAGGAAAGAGCAATAGACCAGACCAACCTACAAAAACAAAGCAGTACCTCCGTAACCA 12152884 Query 123886 GTCGTCAAGAACATCAAA 123903 ||| || | || |||||| Sbjct 12152885 GTCATCCATAATATCAAA 12152902 >seq7 Length=29178675 Score = 114 bits (126), Expect = 1e-20 Identities = 162/226 (72%), Gaps = 4/226 (2%) Strand=Plus/Minus Query 139317 TGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGT 139376 || || || |||||||| || || ||||| || || ||||||||||| || ||||| || Sbjct 22863467 TGAGCAGTACAGATGTTGCTAGTGGCTTTATCCCTCCTAATATGCTGTTCCCTAGTCTGC 22863408 Query 139377 AGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTC--CACTGACTGACCTACAATTCTGC 139434 | || | | | || || || || | || |||| || ||| | ||| || | Sbjct 22863407 ATCGCCATACGCAAAGCTGGCTTCCCAAAGGAATCAACACTAAC--ACCAATAATCCTCC 22863350 Query 139435 CAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGT 139494 |||| ||| |||||||||||| | || || || || || |||||||||||||| || | Sbjct 22863349 CAGGCATCATTCTCTTATACTCTTGTGAAGTAGCCAAAAACGCAGCATGAGGACCACCAT 22863290 Query 139495 ATCCCATAGGAATACCAAACCTTTGCATACTACCTACAGCAATATC 139540 | ||||| |||| |||||||||||| ||| ||| ||||||| Sbjct 22863289 AACCCATCGGAACACCAAACCTTTGAGCCGAACCAACAACAATATC 22863244 Score = 96.9 bits (106), Expect = 4e-15 Identities = 124/170 (73%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||| || || ||||| |||| ||||| | || || || | || ||||| || Sbjct 22862928 CATAGCCTCCGCCGCAGCAGTACCTTCGTCTAACAACGAAGCATTAGACATAGGTAAACC 22862869 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||||| || || || | ||| ||| |||| | || | || | ||||| ||||| || Sbjct 22862868 AGTAAGATCAGTAATCATCGTCTGGAAATTAAGCAACGACTCAAGCCTTCCTTGAGAGAT 22862809 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC-AAGA 140027 |||||||||||| ||||| || || |||||| ||||||||| |||| Sbjct 22862808 CTCAGCTTGATAAGGAGTATACTGAGTATACCAAGCAGGATTCTCTAAGA 22862759 Score = 93.3 bits (102), Expect = 5e-14 Identities = 87/109 (80%), Gaps = 4/109 (4%) Strand=Plus/Minus Query 138163 ATGGTGTGAGATGTTTTGCT--ACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||| | ||||| ||| |||||||| ||||| | |||||||| ||||||||||| Sbjct 22865372 ATGGTGCCAAATGTT--GCTTCACACCAATGGGACCCATACCAGGACCACCACCTCCATG 22865315 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACCA 138269 ||||||||||| ||||| || | ||| ||||| || ||||| || ||| Sbjct 22865314 AGGAATACAGAAGGTCTTGTGGAGATTGAGATGGCACACATCCGCTCCA 22865266 >seq6 Length=37079636 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| |||||||| || |||||| |||| |||| | || ||||| | || || | ||| Sbjct 27007380 CATCGCCTCTGCAGCAGCAGTTCCTTCGTCTAGCAACGACGCGTTGGACATAGGAAGTCC 27007439 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 || || || || || | ||| || ||||| | | || ||| | || ||| ||||| || Sbjct 27007440 AGTGAGATCAGTAATTACCGTCTGATAATTAAGCAGAGATTCAAGTCGTCCTTGAGAAAT 27007499 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTC 140023 |||||||||||| ||||| || || |||||| ||||||||| Sbjct 27007500 CTCAGCTTGATAAGGAGTATACTGAGTATACCAAGCAGGATTCTC 27007544 Score = 91.5 bits (100), Expect = 2e-13 Identities = 152/216 (70%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 124783 TGCTTCCCAGATTGGGTAGAAGTGTAGTCCGATAGCGTTTGATGATGGAACAACTGCACC 124842 |||||||||||| ||||| || || | | ||||| ||| | |||| || ||||| Sbjct 27053675 TGCTTCCCAGATCGGGTAAAAATGCAAACA-ATAGCTGCTGAAGTAGGAATAATGGCACC 27053733 Query 124843 AGAGATGATGTTGTTACCATATAAGAA-AGAACCCGCTACTGGTTCTCTGATTCCGTCGA 124901 || || || ||||| ||||| ||||| ||| || | || | ||| | || || || | Sbjct 27053734 TGAAATAATATTGTTTCCATA-AAGAAGAGATCCAGAAACAGATTCACGAATACCATCAA 27053792 Query 124902 TATCGACAGGAGGTGCTGCAATAAATGCAACGATGAAACATGCTGCTGCTGTGAGTAAGC 124961 |||| || ||||| | ||||| ||||| | | ||| | | ||| || | |||| Sbjct 27053793 TATCTACTGGAGGAGTAGCAATGAATGCGATATTAAAAACGGAAGTTGCGGTCAATAAGG 27053852 Query 124962 ATGGAATCATTAGAACACCAAACCAACCAACATAAA 124997 |||||||| | |||||||||||| |||| |||| Sbjct 27053853 TAGGAATCATCAAAACACCAAACCATCCAATGTAAA 27053888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578797407942920