Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq20831 455 4e-123 seq3 432 5e-116 seq7 192 8e-44 seq2 134 2e-26 seq6 123 3e-23 seq1 89.7 7e-13 >seq20831 Length=3535 Score = 455 bits (504), Expect = 4e-123 Identities = 570/782 (73%), Gaps = 0/782 (0%) Strand=Plus/Plus Query 26935 GCAGCAAGGAAGAAGTGCAAGGAACGTGAGTTGTTGAATGAAGCATATTGGAAGATCAAA 26994 || || | |||||| || || ||||| || |||||||| |||||||||||||||||| Sbjct 3 GCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAAT 62 Query 26995 CGACCGAAGTAGCCATGTGCTGCGACGATGTTGTAGGTCTCTTCTTCTTGACCGAACTTA 27054 || || || || ||||| || || || |||||||| || ||||||||||| ||||| | Sbjct 63 CGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATCTG 122 Query 27055 TAACCATAGTTCTGTGACTCAGTTTCAGTCGTCTCACGGACGAGTGAAGATGTAACCAGA 27114 ||||| | || || ||| |||| || || || | || | ||| || |||| Sbjct 123 TAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAG 182 Query 27115 CTTCCGTGCATAGCAGAGAAAAGAGATCCACCGAATACCCCAGCAACACCGAGCATGTGG 27174 || ||||||||| || | || || |||||||| ||||| ||||| | |||||| Sbjct 183 GAACCATGCATAGCACTAAATAAGGAGCCGCCGAATACACCAGCTACACCTAACATGTGA 242 Query 27175 AACGGGTGCATAAGGATATTGTGTTCTGCCTGGAATACAAGCATGTAGTTAAAAGTACCA 27234 || ||||||||||| || ||||| || ||||||||||||| ||| |||| ||||||||| Sbjct 243 AATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCA 302 Query 27235 GAGATACCAAGAGGCATAGCATCGGAGAAAGAACCTTGACCGAAAGGATAGACGAGGAAT 27294 ||||| || ||||||||| |||| || ||| |||||||| | || || | | ||| Sbjct 303 GAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAA 362 Query 27295 ACTGCACTCGCAGCAGCGACTGGAGCAGAATATGCTACACAGATCCATGGACGCATACCT 27354 || ||| | ||||| || || ||||| |||||||| ||| ||||| ||||||||||| Sbjct 363 ACAGCAGTTGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCC 422 Query 27355 AAACGATATGAGAGTTCCCACTCACGTCCCATATAAGCATAGATGCCGATAAGGAAGTGG 27414 | ||| | |||||||||||||| ||||||||| | | || | | ||||| Sbjct 423 AGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGT 482 Query 27415 AAGACTACCAGTTGGAAAGGACCACCGTTATACAACCACTCATCGAGTGATGCTGCTTCC 27474 | || | |||| ||||||| ||||| || | ||| ||||| | ||||| |||||| Sbjct 483 AGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCC 542 Query 27475 CAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCACCAGAAATG 27534 ||||| ||||| || || | ||| || || ||| | || | || ||||| ||||| Sbjct 543 CAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATA 602 Query 27535 ATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAATATCGACG 27594 || ||||| || || | ||| || |||| ||| |||||||||||||| |||||||| || Sbjct 603 ATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACT 662 Query 27595 GGTGGTGCTGCGATGAATGCGACAATGAAGCAGACAGTTGCTGCTAACAGTGTTGGGATC 27654 || || || || |||||||||| ||| || | |||||| | || | || |||||| Sbjct 663 GGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATC 722 Query 27655 ATCAGTACACCGAACCAACCAACATACAAACGGTTGTTAGTTGATGTCACCCACTCACAG 27714 |||| ||||| ||||| |||| || | ||| || | ||| || | ||| | |||| Sbjct 723 ATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTACAG 782 Query 27715 AA 27716 || Sbjct 783 AA 784 >seq3 Length=27950219 Score = 432 bits (478), Expect = 5e-116 Identities = 710/1021 (70%), Gaps = 7/1021 (1%) Strand=Plus/Plus Query 23386 ATCAAAGAGCATTACCTCTTGGAAGGATTTCCTCAATTACAGGAAAGTTTTCGTGTGGTT 23445 || ||||||| || || | ||| || | ||||||| | || |||||| || || | Sbjct 12151886 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAAGGAATATAAGGTTTTCATGAGGCT 12151945 Query 23446 GGTCAATAGTCATCATCCATTCACGGAGGCCATTGTTCAACAAAATATTTTTCGTGTAGA 23505 || | || | |||||| |||| | || | ||| || | ||||||||| || | || Sbjct 12151946 TATCTAGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATTGA 12152005 Query 23506 AGGTCTCATA---CGAACCATCTTCAGCAGCACGAATCTCTTGACTCACAAAATCATAAG 23562 | |||||| | |||| ||||| || ||||| | || || || || ||||| | Sbjct 12152006 AAGTCTCAAATTTCGAA---TCTTCCGCTGCACGGGTTTCCTGGGAAACGAAGTCATAGG 12152062 Query 23563 CACGAAGATTAAGAGCAAGCCCAATGATGCCAATAGAAGAGACCCAAAGACCCATGACAG 23622 ||| || || | ||| || || | | |||| || | | ||| | ||| | || | Sbjct 12152063 CACATAGGTTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCG 12152122 Query 23623 GAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATTT 23682 ||||| |||||| |||| || |||||||| |||||| ||| |||||||| |||| || Sbjct 12152123 ATACAAATAACATATAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGAATT 12152182 Query 23683 GTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCGA 23742 ||||||||| || || || || ||||| ||||| || || || | ||||| | | | Sbjct 12152183 ATGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAA 12152242 Query 23743 ACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACTC 23802 | || || || ||||| || ||||||||| | | ||||| || |||||| | | Sbjct 12152243 AAGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCAC 12152302 Query 23803 CATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAGG 23862 |||||||||| | || || || | || |||| ||| | |||||||||||||| || | Sbjct 12152303 CATGAATAGCGCATAGCAGAGCGGCGCCGAGTACACCGACGACTCCCATCATATGAAATG 12152362 Query 23863 GGTTGAGCGTCCAGTTATGAAAGCCCTGGAGGAAGAGAAGGAACCTGAAAATCGCCGCAA 23922 |||| | |||| |||||||| || |||| || || | ||| | || || ||||| | Sbjct 12152363 GGTTCAATATCCAATTATGAAACCCTTGGAAAAA-AGGATGAATCGAAATATAGCCGCTA 12152421 Query 23923 CACCGAAACTCGGCGCAAAGAACCAAGATGACTGTCCCAAAGGATAGATGAGGAATACAG 23982 |||| ||||| ||||||||||||||| || || |||| ||||| || |||| ||| Sbjct 12152422 CACCAAAACTAGGCGCAAAGAACCAACCAGATTGACCCAGTGGATAAATTAGGAGGACAA 12152481 Query 23983 ACACGAATACAGCAATAGGACCAGAAAAAGCAATCGCATTGTAGGGACGGATTCCAATTA 24042 | || || ||||| || |||||||| || || || ||||| || || || | | || Sbjct 12152482 AAACAAAAACAGCGATTGGACCAGAGAATGCGATTGCATTATAAGGGCGCAATTGAACGG 12152541 Query 24043 GACGTGCCAGTTCAAACTGACGTAACATAAAACCTATAAGTGCAAAGGCACCGTGGAGAG 24102 || || |||||||| |||||||||||||||| ||| | |||||| || |||| ||||| Sbjct 12152542 ATCGAGCAAGTTCAAATTGACGTAACATAAAACATATTAATGCAAAAGCGCCGTAGAGAG 12152601 Query 24103 CAACAAAGGACCAAAGCCCTCCAAGTTGGAGCCACCGTTGAAAGTCCCCTTGAGACTCAG 24162 ||||||| | | | || || || | ||| ||| || ||| || | ||| | ||| Sbjct 12152602 CAACAAAAGCCTAGAGACCGCCTAATTGACACCAACGAGTAAAATCTCTTTGTGCTTCAA 12152661 Query 24163 GACCCCAAAGTAGAAGAAGAGAATGACCCATAGCGTCAGCAGGCGTCGAGACAGCTGCCG 24222 ||||||| |||| | | |||||| | | | | |||||| ||||| | || || | Sbjct 12152662 GACCCCACAGTAACAACAAAGAATGTGCTAAACTATTAGCAGGAGTCGAAATGGCAGCGG 12152721 Query 24223 TAAGAAAGTTAGCACCCTCAAGATAGGAACTAGCAAGTCCATGGGTGTACCAACTCGTAA 24282 | ||| || ||| || | |||||||||||| | |||||| || ||||| || | Sbjct 12152722 TTTAAAAATTGCAACCTTCTAAATAGGAACTAGCCAATCCATGAGTATACCATGAAGTTA 12152781 Query 24283 CAAAAGCTGTGCCAGTAAGCCAACCGCCAATGGCAAGATAAGCAGTGGGAAGAAGTAGGA 24342 |||| | || || || | |||| | || | || | ||| ||| |||| || | | Sbjct 12152782 CAAAGGTTGCACCTGTGAACCAATCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAATA 12152841 Query 24343 GTCCAGACCAACCCACAAAGACAAAGCGATCCCGTTTAACCCAGTCGTCCAAGATGTCAA 24402 | ||||||||||| ||||| ||||||| | || | |||||| |||| || |||| Sbjct 12152842 GACCAGACCAACCTACAAAAACAAAGCAGTACCTCCGTAACCAGTCATCCATAATATCAA 12152901 Query 24403 A 24403 | Sbjct 12152902 A 12152902 >seq7 Length=29178675 Score = 192 bits (212), Expect = 8e-44 Identities = 205/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 23622 GGAACAAACAACATAAAGAAGTGCAACCAACGCTTATTGCTAAACGCAACCCCGAAGATT 23681 || ||||| ||||||||||| || |||||||| |||||| ||| |||||||| |||||| Sbjct 25949238 GGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATT 25949297 Query 23682 TGTGACCAAAAACGATTTGCTGTAACCATCGAATAGGTCTCCTCCTCCTGAGTGGAATCG 23741 ||||||||||| || || || || ||||| ||||| || || || | ||||| | | Sbjct 25949298 TGTGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTA 25949357 Query 23742 AACGCTTTAAAAGTGTTTGCCTGTTCTCCATCTTCATACAGTGTATTCTCGACAGTAACT 23801 || || || || ||||| || ||||||||| | | ||||| || |||||| | Sbjct 25949358 AAAGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCA 25949417 Query 23802 CCATGAATAGCAGAGAGAAGTGCTCCTCCCAGTATACCAGCAACTCCCATCATATGGAAG 23861 ||||||||||| | || || || | ||||||| ||| || |||||||||||||| || Sbjct 25949418 CCATGAATAGCGCATAGCAGAGCGGCGCCCAGTACACCGGCGACTCCCATCATATGAAAT 25949477 Query 23862 GGGTTGAGCGTCCAGTTATGAAAGCCCTGGA 23892 ||||| ||||| |||||||| || |||| Sbjct 25949478 GGGTTCTATGTCCAATTATGAAACCCTTGGA 25949508 >seq2 Length=28351830 Score = 134 bits (148), Expect = 2e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | ||| ||||| |||||||||| || ||||| ||| |||||||||| ||| Sbjct 3660449 TCTTCTTTGTGAGTCTCAATGGTAACATCAGAGGTAGGATAAGCAGCACAAGTGAGAACA 3660508 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 || ||||| |||| || |||||||| | ||| ||| ||| ||| || || | ||| Sbjct 3660509 AATCCTTCAGCAATCTGTTCATCATCGAGGAAACTCTGGTCAGATTGATCAACAGATCCA 3660568 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || || ||||||||||| |||||| | ||| ||||| |||||||| ||||| Sbjct 3660569 GACTTAACTTTACCTGCACAGCTTGAACATGAACCAGCACGGCAAGAGTAAGGCAAATCG 3660628 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | || |||| || ||||| || |||| ||| Sbjct 3660629 ATTCCTGCTTCTTCAGCTGCGTCGAGGACGTA 3660660 Score = 116 bits (128), Expect = 5e-21 Identities = 184/264 (70%), Gaps = 0/264 (0%) Strand=Plus/Minus Query 46980 ATCATCGCGGGAAGAACATGCGAACTTTCTAGGTCAAAATTATCATTTGGACCATATAGG 47039 |||| || ||||| ||||| ||| | || ||| ||||| || |||||||| || || Sbjct 27011860 ATCAAAGCAGGAAGCACATGAGAATTCTCCGGGTGGAAATTGTCGTTTGGACCGTAAAGA 27011801 Query 47040 TTTGTAGGCATCAAAGAGATAGCATTAAATCCATACTGCTGATGGTATGCCTGACACATC 47099 || || ||||| || || |||| || || ||| |||| || ||||||||| Sbjct 27011800 TTCGTGGGCATACCGGAAATCGCATCCCATTGATGCTGAATCCGGTAAGCTTGACACATC 27011741 Query 47100 TTGATACCAGCAATCTTTGCAATAGCATAAGAATCATTACTAGGTTCAAGAGGACCACTC 47159 || || || |||||||| ||||| || || | || ||| | |||||||| |||||| | Sbjct 27011740 TTAATCCCTGCAATCTTGGCAATCGCGTACCATTCGTTAGTCGGTTCAAGCGGACCAGTG 27011681 Query 47160 ATTAGATATTCTTCCCTAATAGGTTGTTCACATAATTTTGGATAAATGCAGGAAGAACCA 47219 | ||| ||| || || || | ||||| ||||||||||| || |||||| Sbjct 27011680 AGAAGAGCGGATTCGGGTATTGGCTGAGGAGCGAATTTCGGATAAATGCAAGAGGAACCA 27011621 Query 47220 AGAAATAAAAGTTTCTTAACACCA 47243 || || | ||| ||||| || ||| Sbjct 27011620 AGGAAGAGAAGCTTCTTCACGCCA 27011597 >seq6 Length=37079636 Score = 123 bits (136), Expect = 3e-23 Identities = 163/225 (72%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 27468 TGCTTCCCAGATTGGGTAGAAGTGGAGACCGATTGCATTTGAACTTGGGACAACTGCACC 27527 |||||||||||| ||||| || || | || || || |||| | || | || ||||| Sbjct 27053675 TGCTTCCCAGATCGGGTAAAAATGCAAACA-ATAGCTGCTGAAGTAGGAATAATGGCACC 27053733 Query 27528 AGAAATGATGTTGTTGCCATACATAAGTGAACCAGCAACGGGTTCACGAATACCGTCAAT 27587 ||||| || ||||| ||||| | ||| || |||| ||| | |||||||||||| ||||| Sbjct 27053734 TGAAATAATATTGTTTCCATAAAGAAGAGATCCAGAAACAGATTCACGAATACCATCAAT 27053793 Query 27588 ATCGACGGGTGGTGCTGCGATGAATGCGACAATGAAGCAGACAGTTGCTGCTAACAGTGT 27647 ||| || || || | || |||||||||| | | || | |||||| | || | || Sbjct 27053794 ATCTACTGGAGGAGTAGCAATGAATGCGATATTAAAAACGGAAGTTGCGGTCAATAAGGT 27053853 Query 27648 TGGGATCATCAGTACACCGAACCAACCAACATACAAACGGTTGTT 27692 || ||||||| ||||| ||||| |||| || | ||| || || Sbjct 27053854 AGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTTT 27053898 >seq1 Length=25238555 Score = 89.7 bits (98), Expect = 7e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 32621 TCTTCTTGTTCAGTTTCAATTATAACATCAGAAGTTGGATATGCAACACAAGTGAGCACA 32680 ||||||| | |||||||| | |||||||||||||| || || ||||| || | ||| Sbjct 6598017 TCTTCTTTGTGGGTTTCAATGGTGACATCAGAAGTTGGGTAAGCGACACAGGTTAAGACA 6597958 Query 32681 AACCCTTCTTCAATTTGATCATCATCCAAGAACGACTGATCACTTTGGTCTACTGTACCA 32740 | ||||||| ||||| || || |||||||| || || ||||| || | ||| Sbjct 6597957 TAGCCTTCTTTCATTTGGTCGTCGTCCAAGAAGCTTTGGTCGGACTGGTCAACGGAGCCA 6597898 Query 32741 GATACAATCTTACCTGCACAAGATGAACAGGCACCTGCACGACAAGAGTAGTTTAAATCA 32800 || || | ||||| || || || || | ||| ||||| || ||||| || || Sbjct 6597897 GAGACGACTTTACCGGCGCAGCTAGAGCAAGAACCAGCACGGCATGAGTAAGGCAAGTCG 6597838 Query 32801 ACCCCACCTTCCTCTGCTGCATCAAGGATGTA 32832 | || |||| || ||||| || |||| ||| Sbjct 6597837 ATTCCGGCTTCTTCAGCTGCGTCGAGGACGTA 6597806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 665263381937720