Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 seq1 129 7e-25 >seq6 Length=37079636 Score = 150 bits (166), Expect = 2e-31 Identities = 283/415 (68%), Gaps = 6/415 (1%) Strand=Plus/Minus Query 175235 TTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAG 175294 ||||||| ||||| ||| | |||||||||| || ||||||| |||||| || Sbjct 13420699 TTGTGGAGTTTCTGAAGAAGCCCGAGAGATTCACTGCGGTTGGTGCCCGGATCCCGAAAG 13420640 Query 175295 GCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGG 175354 ||| || || ||| || |||||||| || ||||| | || ||| || || | Sbjct 13420639 GCGTTCTCCTTATTGGTCCTCCTGGTACGGGGAAAACCCTTTTGGCAAAAGCTATTGCTG 13420580 Query 175355 GTGAATCAAATGTCCCATTCATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTG 175414 ||||| | ||| || ||| || ||||| | | ||||| ||||||||||| | Sbjct 13420579 GTGAAGCTGGTGTGCCTTTCTTCTCCATCTCTGGTTCTGAGTTTGTTGAGATGTTTGTCG 13420520 Query 175415 GTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTA 175474 |||| |||||| ||| || |||||||| || | | ||| ||||| || || | Sbjct 13420519 GTGTTGGTGCCTCAAGAGTCCGCGATCTTTTCAAGAAAGCCAAGGAAAACGCTCCCTGCA 13420460 Query 175475 TTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGC 175531 ||||||| ||||||| |||||||| || || | |||| | | | || |||| Sbjct 13420459 TTGTCTTTGTTGATGAAATTGATGCTGTTGGTAGGCAAAGAGGAACCGGAATTGGT---G 13420403 Query 175532 CAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTG 175591 || ||||| || |||||||| || ||||||| ||||| || ||||||||||| |||| Sbjct 13420402 GAGGTAATGATGAAAGAGAACAGACTCTTAATCAGCTACTAACTGAGATGGATGGATTTG 13420343 Query 175592 ACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGA 175646 | | | || || || | || |||| || ||||| | | || || ||||| Sbjct 13420342 AAGGTAACACCGGTGTTATTGTAGTTGCTGCAACTAACAGAGCAGACATTCTTGA 13420288 Score = 114 bits (126), Expect = 2e-20 Identities = 196/282 (70%), Gaps = 12/282 (4%) Strand=Plus/Plus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || ||||| ||||| || | ||| |||| | || || || || || || ||| Sbjct 7695195 CCGGGGACGGGCAAGACGCTTTTGGCCAGAGCTGTGGCCGGAGAGGCAGGCGTGCCTTTC 7695254 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || || |||| | | || || ||| | || |||||||| ||||| |||||| Sbjct 7695255 TTCTCTTGTGCTGCGTCTGAGTTCGTCGAGCTTTTCGTTGGTGTTGGTGCGTCTAGGGTT 7695314 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAA----CCATGTATTGTCTTCATTGATGA 175490 | ||| | ||||| | ||| ||| ||| || |||||||| ||||||||||| Sbjct 7695315 AGGGATTTGTTTGAGAAGGCC----AAATCCAAAGCACCTTGTATTGTTTTCATTGATGA 7695370 Query 175491 GATTGATGCGGTGGGCAAGCAACGCAGCGCTGGT--GGTATGCCAGCAAATGACGAGAGA 175548 ||||||||| || || | ||| | | |||||| || | | | |||||| |||||| Sbjct 7695371 GATTGATGCTGTTGGTAGGCAGAGAGGAGCTGGTATGGGAGGT--GGAAATGATGAGAGA 7695428 Query 175549 GAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||||| || |||||||| || | || ||||||||||| ||| Sbjct 7695429 GAACAGACGATTAATCAGCTCTTGACTGAGATGGATGGTTTT 7695470 >seq1 Length=25238555 Score = 129 bits (142), Expect = 7e-25 Identities = 299/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 175237 GTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGC 175296 ||||| ||| | ||| | || ||||| | || ||||||||||||||| ||| Sbjct 3041276 GTGGAGTTTTTAAAGAAGCCTGAGAGGTTCACTGCGGTTGGTGCCAAGATCCCGAAAGGT 3041217 Query 175297 GCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGT 175356 | || || | ||| || ||||| || || ||| | | || ||||||||| ||| Sbjct 3041216 GTTCTCCTTGTTGGTCCTCCTGGTACTGGTAAAACCTTGTTGGCAAAAGCCATCGCTGGT 3041157 Query 175357 GAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGG 175415 ||| | ||| || ||| | || | ||| | | | ||||| ||||||||||| || Sbjct 3041156 GAAGCCGGTGTACCCTTCTTTTCAAT-CTCGGGTTCTGAGTTTGTTGAGATGTTTGTCGG 3041098 Query 175416 TGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTAT 175475 ||| |||||| |||||| |||||||| || ||| ||| |||||| || || || Sbjct 3041097 TGTTGGTGCCTCAAGGGTGCGCGATCTTTTCAAAAAAGCCAAGGAAAATGCGCCGTGCAT 3041038 Query 175476 TGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCC 175532 ||| || ||||||| || ||||| || || | ||| | | | || |||| Sbjct 3041037 TGTTTTTGTTGATGAAATAGATGCTGTTGGTAGACAAAGAGGAACCGGAATTGGT---GG 3040981 Query 175533 AGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGA 175592 || ||||| || ||||| || || ||||||| || || || ||||||||||| ||||| Sbjct 3040980 AGGTAATGATGAAAGAGAGCAGACTCTTAATCAGCTCCTGACTGAGATGGATGGTTTTGA 3040921 Query 175593 CAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGC 175652 | | || || || | || |||| || || || | | || || ||||| ||| Sbjct 3040920 GGGTAACACCGGTGTTATCGTAGTTGCTGCAACCAACAGAGCAGACATTCTTGACTCCGC 3040861 Query 175653 CCTCCTTCGCCCGGGTCGTTTTGATCG 175679 | || | || || |||||||| || Sbjct 3040860 TTTGCTGAGACCAGGACGTTTTGACCG 3040834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596362508320480