Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq20831 376 3e-99 seq6 107 2e-18 >seq20831 Length=3535 Score = 376 bits (416), Expect = 3e-99 Identities = 517/720 (72%), Gaps = 2/720 (0%) Strand=Plus/Plus Query 8122 TTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAAT 8180 ||||| |||| | ||||| |||||||| |||| ||||| || ||||||||||| ||||| Sbjct 33 TTGTTGAAACTA-GCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 91 Query 8181 ATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTCTTCAGT 8240 || || || ||||||||||| || || | ||||| | || ||| || | ||| || Sbjct 92 GTTGTAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 151 Query 8241 TGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCC 8300 || || ||||| | | ||| || || || ||||| ||||||||||| || | || || Sbjct 152 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAAGGAGCC 211 Query 8301 ACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGC 8360 ||||| | ||| ||||| ||| ||| || || || |||||||||||||| ||||| || Sbjct 212 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 271 Query 8361 TTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAA 8420 |||||||| | ||| ||||| || |||||||| || ||||||||||| |||||||| || Sbjct 272 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 331 Query 8421 TGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACT 8480 || ||||||| ||| || | ||||| || || ||||| | || ||||| Sbjct 332 ACTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAGCTGA 391 Query 8481 ATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACC 8540 |||||| ||| ||||| || | |||||| | ||| | | ||||||| | ||| Sbjct 392 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 451 Query 8541 CATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACCTCCGTT 8600 ||| ||| || | |||| | ||||| | | || | | ||| ||||| ||||| Sbjct 452 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTT 511 Query 8601 ATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCCAATAGC 8660 || | ||| ||||| | | ||||||||||| || || || || || || |||||||| Sbjct 512 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCAATAGC 571 Query 8661 GTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGC 8720 |||| |||| | ||||| || || || |||||||| || | | || || | Sbjct 572 TGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 631 Query 8721 AACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAA 8780 |||||||||||||||||| || ||||| || || ||||||||||| ||||| | ||||| Sbjct 632 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 691 Query 8781 GCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAG 8840 | || || | || ||| ||| ||||| | ||| |||||||| || | ||||| Sbjct 692 AACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 751 >seq6 Length=37079636 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 8626 GCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCA 8685 |||||||| || || || || || || | |||||| |||| |||| | ||||| Sbjct 27053676 GCTTCCCAGATCGGGTAAAAATGCAAAC-AATAGCTGCTGAAGTAGGAATAATGGCACCT 27053734 Query 8686 GAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATA 8745 || || || ||||||||||| | | || || | ||||| |||||||||||| || ||| Sbjct 27053735 GAAATAATATTGTTTCCATAAAGAAGAGATCCAGAAACAGATTCACGAATACCATCAATA 27053794 Query 8746 TCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAA 8805 || || || |||| |||||| ||||| | |||| | || || | || ||| | Sbjct 27053795 TCTACTGGAGGAGTAGCAATGAATGCGATATTAAAAACGGAAGTTGCGGTCAATAAGGTA 27053854 Query 8806 GGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTT 8856 |||||||| | ||| |||||||| || | ||||| | | | ||| ||||| Sbjct 27053855 GGAATCATCAAAACACCAAACCATCCAATGTAAAGAC-GATTTTTTTACTT 27053904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615648611066120