Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_020859.1 Length=175430 Score E Sequences producing significant alignments: (Bits) Value seq20831 484 7e-132 seq3 423 2e-113 seq7 192 7e-44 >seq20831 Length=3535 Score = 484 bits (536), Expect = 7e-132 Identities = 577/783 (74%), Gaps = 0/783 (0%) Strand=Plus/Minus Query 165768 CTTCTGCGAATGGGTTACCAGCACAAATAACCGTCTGTATGTCGGTTGGTTTGGTACGCT 165827 |||||| | ||| | |||||||| | || ||||| || | || ||||||||| | Sbjct 785 CTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 726 Query 165828 GATGATTCCAACTCTGTTGGCAGCAACTATCTGCTTCATCGTCGCCTTCATCGCTGCTCC 165887 |||||| || || | ||| | |||||| | || || |||| ||||| |||||||| Sbjct 725 GATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 666 Query 165888 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCTCTGATGTATGGTAACAA 165947 || || || || || || || |||||||| || |||| ||||| | || || ||||| Sbjct 665 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAA 606 Query 165948 CATCATCTCTGGTGCAGTTGTTCCCTCTTCCAACGCAATTGGTCTACACTTCTATCCCAT 166007 || || || ||||| || |||| |||| || |||||| | || || || || || Sbjct 605 TATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGAT 546 Query 166008 CTGGGAAGCCGCATCGCTTGACGAATGGCTCTATAACGGTGGTCCTTTCCAACTGGTTGT 166067 ||||||||| ||||| |||| |||||||| || ||||| ||||||| |||| |||| Sbjct 545 CTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGT 486 Query 166068 CTTCCACTTCCTGATTGGCATCTATGCCTACATGGGTCGTGAGTGGGAACTGTCTTACCG 166127 | ||||| | |||| | | || |||||||||||||||||||| || ||| Sbjct 485 TCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 426 Query 166128 TCTAGGTATGCGTCCATGGATCTGTGTTGCTTACTCAGCACCAGTCGCTGCTGCGAGTGC 166187 ||| ||||||||||| ||||| |||||| || ||||| || || || ||||| | ||| Sbjct 425 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTGC 366 Query 166188 AGTATTCCTAGTATATCCTTTCGGTCAAGGTAGTTTCTCTGATGCAATGCCACTCGGAAT 166247 || ||| | | || || | |||||||| ||||| ||||||| ||||| || ||||| Sbjct 365 TGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAAT 306 Query 166248 CTCAGGAACATTCAACTACATGTTGGTCTTCCAAGCTGAGCACAATATTCTCATGCATCC 166307 ||| || || ||||||| ||| | || ||||| ||||||||||| ||||| ||||| || Sbjct 305 CTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCC 246 Query 166308 CTTCCATATGCTCGGCGTTGCTGGGGTATTTGGTGGCAGTTTGTTTAGTGCTATGCACGG 166367 || || ||| | || || ||||| ||||| || ||| || |||||||||||||| || Sbjct 245 ATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATGG 186 Query 166368 AAGTTTGGTTACTTCTTCTCTCGTTAGAGAGACGACTGAAACCGAATCCCAAAACTACGG 166427 ||||| |||||| | | | || || || || |||| ||||| || | || Sbjct 185 TTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGG 126 Query 166428 TTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTCGG 166487 ||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| || || Sbjct 125 TTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTGG 66 Query 166488 TCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGCTCCTTGCACTTCTTCCTTGC 166547 || |||||||||||||| ||| |||||||| || || || || || |||||| | || Sbjct 65 CCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGC 6 Query 166548 TGC 166550 || Sbjct 5 GGC 3 >seq3 Length=27950219 Score = 423 bits (468), Expect = 2e-113 Identities = 707/1019 (69%), Gaps = 5/1019 (0%) Strand=Plus/Minus Query 167014 TTTGATGTCCTCGATGACTGGCTTAAAAGGGATCGTTTTGTTTTTGTTGGCTGGTCTGGA 167073 |||||| | | ||||||||| | ||| | | ||||||||||| || |||||||| Sbjct 12152902 TTTGATATTATGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTGGT 12152843 Query 167074 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 167133 || | || ||||| ||| ||| | ||| | || | |||| | || || | || || Sbjct 12152842 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCTTT 12152783 Query 167134 GTCACGAGTTGGTATACTCATGGACTCGC--GTCCAGTTATCTTGAGGGTGCGAACTTTC 167191 || || ||||||||||||||| | || || | ||| | || ||| || ||| Sbjct 12152782 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCC--TATTTAGAAGGTTGCAATTTTT 12152725 Query 167192 TTACTGCGGCAGTTAGTACTCCAGCAGATTCTATGGGTCATTCTTTACTTCTTCTATGGG 167251 || || || || ||||| || || | | | |||||||| | | || |||| Sbjct 12152724 AAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGG 12152665 Query 167252 GTCCTGAATCTCAAGGGGATTTCGTCAGGTGGCTCCAACTTGGGGGACTCTGGGCTTTTG 167311 ||| |||| | ||| | ||||| | ||| ||| | || || |||| |||||||| Sbjct 12152664 GTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTG 12152605 Query 167312 TGGCGCTCCACGGAGCCTTTGCTCTCATTGGTTTCATGCTTCGACAGTTTGAACTTGCTC 167371 | || ||| |||| || ||||| | || |||| ||| | || || ||||||||||||| Sbjct 12152604 TTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTC 12152545 Query 167372 GCCTGATTGGTATCCGTCCCTACAATGCTATTGCTTTCTCTGGTCCTATTGCTGTCTTCG 167431 | || | || || || ||||| || || ||||||||||| || ||||| || | Sbjct 12152544 GATCCGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTTG 12152485 Query 167432 TTAGCGTTTTCCTTCTCTATCCCCTCGGTCAAAGCAGCTGGTTCTTTGCCCCGTCCTTCG 167491 || || |||| | ||||| || |||||| | ||||||||||| || || | Sbjct 12152484 TTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTG 12152425 Query 167492 GAGTCGCCGCCATCTTCCGATTCCTCCTCTTCCTCCAAGGATTCCACAACTGGACACTGA 167551 | || || || || || |||||| |||| || ||||||| || || || |||| | ||| Sbjct 12152424 GTGTAGCGGCTATATTTCGATTCATCCTTTTT-TCCAAGGGTTTCATAATTGGATATTGA 12152366 Query 167552 ATCCATTTCATATGATGGGTGTAGCAGGTATCCTGGGTGGTGCATTGCTTTCTGCAATCC 167611 | ||||||||||||||||| || | ||| | || || | || |||| | || || | Sbjct 12152365 ACCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATTC 12152306 Query 167612 ATGGTGTTACAGTAGAGAATACTTTGTATGAAGATGGTGAGCAAGCAAACACTTTTAAGG 167671 |||||| ||| ||||| |||||||| | |||||||||||| ||||| || || | Sbjct 12152305 ATGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTG 12152246 Query 167672 CATTCGATTCTACTCAGGAAGAAGAGACTTATTCAATGGTTACAGCAAACCGATTCTGGT 167731 | || | | ||||| | ||||| |||||||||||||| || || ||||| || |||| Sbjct 12152245 CTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGT 12152186 Query 167732 CTCAGATCTTCGGCATTGCTTTCAGCAACAAACGCTGGCTTCATTTCTTTATGTTATTCG 167791 | | |||| || ||||||| ||| ||||| ||| | ||||||| ||||||||| | Sbjct 12152185 CATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATTTG 12152126 Query 167792 TTCCCGTTATGGGACTTTGGACATCATCGATTGGCATCATTGGTCTGGCTCTTAATCTTC 167851 | | || | || | |||| | |||| | | || || ||| | || || Sbjct 12152125 TATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTAT 12152066 Query 167852 GTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTT 167911 |||| || || |||||||| || || | | | || ||||| ||| | | ||||| |||| Sbjct 12152065 GTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGACTT 12152006 Query 167912 TCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATC 167971 || |||||||||| || ||| | || |||||| |||| || ||| | || || | ||| Sbjct 12152005 TCAATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCTAGATA 12151946 Query 167972 AACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGCACTATAA 168030 | |||||||| ||| || | |||| ||||| ||||| ||||| || ||||| || ||| Sbjct 12151945 AGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTACCACGTGGAAACGCTCTTTAA 12151887 Score = 104 bits (114), Expect = 3e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 167904 TGAAACTTTCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACC 167963 ||| ||||||||||||||||| || ||| | || |||||| |||| || ||| | || | Sbjct 27467488 TGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGC 27467547 Query 167964 TATCGATCAACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGC 168023 | ||||| |||||||| ||| || | ||||| ||||| ||||| ||||| || ||||| Sbjct 27467548 TCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGC 27467607 Query 168024 ACTATAA 168030 || ||| Sbjct 27467608 TCTTTAA 27467614 >seq7 Length=29178675 Score = 192 bits (212), Expect = 7e-44 Identities = 205/271 (76%), Gaps = 0/271 (0%) Strand=Plus/Minus Query 167525 TCCAAGGATTCCACAACTGGACACTGAATCCATTTCATATGATGGGTGTAGCAGGTATCC 167584 ||||||| || || || |||||| ||| ||||||||||||||||| || || ||| | | Sbjct 25949508 TCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTAC 25949449 Query 167585 TGGGTGGTGCATTGCTTTCTGCAATCCATGGTGTTACAGTAGAGAATACTTTGTATGAAG 167644 |||| | || |||| | || || ||||||| ||| ||||| |||||||| | ||||| Sbjct 25949448 TGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAG 25949389 Query 167645 ATGGTGAGCAAGCAAACACTTTTAAGGCATTCGATTCTACTCAGGAAGAAGAGACTTATT 167704 ||||||| ||||| || || || || | | ||||| | ||||| ||||||| Sbjct 25949388 ATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATT 25949329 Query 167705 CAATGGTTACAGCAAACCGATTCTGGTCTCAGATCTTCGGCATTGCTTTCAGCAACAAAC 167764 ||||||| || || ||||| || ||||| || ||||| || ||||||| ||| |||| Sbjct 25949328 CAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAAC 25949269 Query 167765 GCTGGCTTCATTTCTTTATGTTATTCGTTCC 167795 | ||| | ||||||||||||||||| || || Sbjct 25949268 GTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 Score = 82.4 bits (90), Expect = 9e-11 Identities = 121/172 (70%), Gaps = 12/172 (7%) Strand=Plus/Plus Query 167852 GTGCTTACGATTTCGTTTCTCAAGAGATCAGAGCGGCGGAGGATCCAGAGTTTGAAACTT 167911 |||| || || |||||||| || || | | || ||||| ||||| ||| Sbjct 20870784 GTGCCTATGACTTCGTTTC-CATGAATTTTGTGCAGCGGAAGATCC-----------CTT 20870831 Query 167912 TCTATACTAAAAACATCCTTCTGAATGAAGGTCTTCGAGCATGGTTAGCACCTATCGATC 167971 |||||| |||||| ||| || | || ||||| |||| || ||| | || || |||| Sbjct 20870832 TCTATAATAAAAATATCTTTTTAAACGAAGGCATTCGTGCTTGGATGGCGGCTCAAGATC 20870891 Query 167972 AACCTCATGAGAACTTTGTGTTCCCAGAGGAAGTTCTCCCACGAGGCAACGC 168023 ||||| |||||||| || | ||| ||||||||||| | ||| || ||||| Sbjct 20870892 AACCTTATGAGAACCTTATATTCTTTGAGGAAGTTCTACTACGTGGAAACGC 20870943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 561053169772400