Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq20831 358 2e-94 seq6 84.2 6e-12 >seq20831 Length=3535 Score = 358 bits (396), Expect = 2e-94 Identities = 543/773 (70%), Gaps = 0/773 (0%) Strand=Plus/Plus Query 26087 AAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCATACTGAAAAATTAATCTCCCAAAG 26146 |||||||| | |||||| || || ||||| ||||| || || || |||| ||||| Sbjct 12 AAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAA 71 Query 26147 TACCCGTGTGCAGCGACAATATTATATGTCTCTTCATCTTGCCCAAACTTATAGCCATAA 26206 || || || ||||| ||||| || || || ||||| ||||| || || | || || | | Sbjct 72 TAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCA 131 Query 26207 TTCTGTGAGACTTCCTCTGTCGTTTCTGCAATAAGTGAGGAAGTAACCAAACTTCCGTGC 26266 || || | | ||||| ||||| || | ||||| ||||| || ||| Sbjct 132 TTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGC 191 Query 26267 ATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAATGGGTGC 26326 |||||| || | | || ||||| || ||||| ||||| ||| || ||||||||| Sbjct 192 ATAGCACTAAATAAGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGC 251 Query 26327 ATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCA 26386 || || || || || || || |||||||| | ||||||||| |||||||||||||| || Sbjct 252 ATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCT 311 Query 26387 AGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGA 26446 |||||||| |||||| |||||| ||||| || | || |||| ||||| || || Sbjct 312 AGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTT 371 Query 26447 GCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAA 26506 || || | | || |||| |||||||||| ||||| || | ||| || || | | || Sbjct 372 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 431 Query 26507 GATAGTTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATG 26566 |||||||||| | || ||| ||||| || | ||| ||||| | | ||| Sbjct 432 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 491 Query 26567 AGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGG 26626 |||| ||| || ||||| ||||||||||| || || | | ||||||||||||||||| Sbjct 492 AGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGG 551 Query 26627 TAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTT 26686 |||||||| | || || || ||| | || | | || ||||| || ||||||||| Sbjct 552 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 611 Query 26687 CCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCT 26746 ||||| | | || || ||||| || ||||| || ||||| |||||||| || || || Sbjct 612 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 671 Query 26747 GCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACC 26806 || ||||| || | |||||| | ||| || | | |||| || ||||| | || Sbjct 672 GCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACA 731 Query 26807 CCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 || |||||||| | || ||||| || ||||| || || | ||| | ||| || Sbjct 732 CCAAACCATCCAATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 784 >seq6 Length=37079636 Score = 84.2 bits (92), Expect = 6e-12 Identities = 152/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 26612 GCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCT 26671 ||||||||||||||||||||||| | | || || || | || | | || ||| Sbjct 27053676 GCTTCCCAGATCGGGTAAAAATGCAAACA-ATAGCTGCTGAAGTAGGAATAATGGCACCT 27053734 Query 26672 GATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATA 26731 || || ||||||||||| || | | || || ||||| | ||||| || ||||| ||| Sbjct 27053735 GAAATAATATTGTTTCCATAAAGAAGAGATCCAGAAACAGATTCACGAATACCATCAATA 27053794 Query 26732 TCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAG 26791 ||||| || || | || ||||| || | ||||| | ||| || | | |||| Sbjct 27053795 TCTACTGGAGGAGTAGCAATGAATGCGATATTAAAAACGGAAGTTGCGGTCAATAAGGTA 27053854 Query 26792 GGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTT 26832 || ||||| | || || |||||||| | || ||||| || Sbjct 27053855 GGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 27053895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147663287444320