Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq20831 423 2e-113 seq6 104 3e-17 >seq20831 Length=3535 Score = 423 bits (468), Expect = 2e-113 Identities = 524/716 (73%), Gaps = 6/716 (1%) Strand=Plus/Minus Query 155011 GGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTC 155070 || ||||| |||||| | ||||||||| | | | | || || | || ||| || Sbjct 742 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 683 Query 155071 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCT 155130 || ||||||||||| ||||| ||||| |||||||||||||||||||| || |||| ||| Sbjct 682 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 623 Query 155131 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGT 155190 | | || || ||||| || || || ||||| || | |||| ||| || |||||| Sbjct 622 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 563 Query 155191 CTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGT 155250 | || || || || || |||||||| ||| | ||||||| ||| | ||||| || ||| Sbjct 562 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 503 Query 155251 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGT 155307 |||| |||| | || | ||||| | | || | ||| | | | |||||| Sbjct 502 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGT 446 Query 155308 CAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 155367 ||||||||||| || |||||| || |||||||||||||| ||||||||| || || Sbjct 445 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 386 Query 155368 CCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCT 155427 || || | ||||| ||||| ||| | |||| || | |||||||| ||| ||| Sbjct 385 CCTGTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCT 326 Query 155428 GATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAA 155487 |||| |||||||| || |||||||||||||| |||| |||| | || ||||| || || Sbjct 325 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 266 Query 155488 CACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCT 155547 ||||| || ||||||||||| || |||||| | || ||||| ||||| ||||| || || Sbjct 265 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 206 Query 155548 CTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAG 155607 | || ||||||||| ||||| ||||| || ||| | ||| | ||||| || || Sbjct 205 TTATTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 146 Query 155608 CAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTT 155667 | || ||| || | ||||||| ||||||||||||||||||||||| |||||||| Sbjct 145 AATGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTA 86 Query 155668 GCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTC 155723 ||||||||||| || || || || | |||||||| ||||| |||||||| || Sbjct 85 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTC 30 >seq6 Length=37079636 Score = 104 bits (114), Expect = 3e-17 Identities = 148/207 (71%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 155011 GGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTC 155070 || ||||| |||||| | ||||| ||| | | | | || || | || | | || Sbjct 27053880 GGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCAACTTCCGTTTTTAATATC 27053821 Query 155071 GCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCT 155130 || ||||||||| | ||||| ||||| |||||||||||||||||| | || |||| ||| Sbjct 27053820 GCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGAATCTGTTTCTGGATCT 27053761 Query 155131 TTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGT 155190 | | ||||| ||||| || || || ||||| || | |||| |||| || ||| || Sbjct 27053760 CTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCAGCAGCTATT-GT 27053702 Query 155191 CTCCACTTCTATCCTATTTGGGAAGCA 155217 | || || || || || ||||||||| Sbjct 27053701 TTGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584632181770760