Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq20831 398 2e-106 seq6 84.2 6e-12 >seq20831 Length=3535 Score = 398 bits (440), Expect = 2e-106 Identities = 552/773 (71%), Gaps = 0/773 (0%) Strand=Plus/Plus Query 40743 AAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAG 40802 ||||| |||| | ||| ||||||||| ||||||||| || || | || ||||| Sbjct 12 AAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAA 71 Query 40803 TAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAG 40862 ||||| || |||||||| ||||| ||||| || |||| || || || | || || | Sbjct 72 TAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCA 131 Query 40863 TTCTGTGATTCAGTTTCCGTGGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGC 40922 || |||||| |||| ||||| |||| || | ||||| || | | || ||| Sbjct 132 TTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGC 191 Query 40923 ATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGC 40982 |||||| ||| || | || || || || || || || || | ||| || ||||||||| Sbjct 192 ATAGCACTAAATAAGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGC 251 Query 40983 ATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCT 41042 || ||||||||||| || || ||||| |||| ||| |||||||| || ||| ||||||| Sbjct 252 ATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCT 311 Query 41043 AAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGA 41102 | ||||||||||||||| ||| || ||||| | ||| |||| ||||| ||||| Sbjct 312 AGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTT 371 Query 41103 GCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTAT 41162 || |||| | ||||||| ||||| ||| ||||| || | |||||| || | | | Sbjct 372 GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAA 431 Query 41163 GAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATG 41222 ||||||||||| | ||| || ||||| || | ||||||||| | ||||| Sbjct 432 CTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATT 491 Query 41223 AGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGG 41282 |||| ||| || ||||||||||||||||| || || | | | ||||||||||| ||| Sbjct 492 AGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGG 551 Query 41283 TAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTC 41342 || ||||| | || || || ||| | |||| | || || || ||||||||||| Sbjct 552 TAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTT 611 Query 41343 CCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCT 41402 ||||| | | || || ||||| || ||||| || ||||| |||||||| || || || Sbjct 612 CCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCA 671 Query 41403 GCGATAAAGGCGATTATGAAACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACA 41462 || || || ||||| || ||| | || || || | ||| | || ||||| | ||| Sbjct 672 GCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACA 731 Query 41463 CCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 |||||||| || | ||| || || || || ||||| || | ||||||||| || Sbjct 732 CCAAACCATCCAATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTACAGAA 784 >seq6 Length=37079636 Score = 84.2 bits (92), Expect = 6e-12 Identities = 152/221 (69%), Gaps = 1/221 (0%) Strand=Plus/Plus Query 41268 GCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCA 41327 ||||||||||| ||||| ||||| | | || || || | |||| | || || Sbjct 27053676 GCTTCCCAGATCGGGTAAAAATGCAAACA-ATAGCTGCTGAAGTAGGAATAATGGCACCT 27053734 Query 41328 GATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATA 41387 || ||||||||||| || || | | || || ||||| | ||||| || ||||| ||| Sbjct 27053735 GAAATAATATTGTTTCCATAAAGAAGAGATCCAGAAACAGATTCACGAATACCATCAATA 27053794 Query 41388 TCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGGTAGCAGTTAGTAATGCT 41447 ||||| || || | || || || ||||| | ||| | || || || | ||| | Sbjct 27053795 TCTACTGGAGGAGTAGCAATGAATGCGATATTAAAAACGGAAGTTGCGGTCAATAAGGTA 27053854 Query 41448 GGAATCATTAGCACACCAAACCAACCTACGTATAGGCGGTT 41488 |||||||| | ||||||||||| || | ||| || || || Sbjct 27053855 GGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 27053895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143655009732714