Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq20831 462 2e-125 seq6 114 1e-20 >seq20831 Length=3535 Score = 462 bits (512), Expect = 2e-125 Identities = 559/758 (74%), Gaps = 12/758 (2%) Strand=Plus/Plus Query 67590 GAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACA 67649 || ||||||||| ||||| ||||||||||| || || || || ||||||||||| ||| Sbjct 30 GAATTGTTGAAACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACA 89 Query 67650 ATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGCTCA 67709 ||||||||||| ||||||||||||||||| ||||||| | || || || | || Sbjct 90 ATGTTGTAAGTTTCTTCTTCTTGTCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCT 149 Query 67710 GTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAA 67769 || ||||| ||||| | | |||||| || | ||||| |||||||||||||| | || Sbjct 150 GTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAATAAGGAG 209 Query 67770 CCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCT 67829 || ||||||||||| ||||| || | ||| || |||||||||||||| ||||||||||| Sbjct 210 CCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCA 269 Query 67830 GCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAG 67889 || ||||| || | ||| |||| ||||||||||| || || |||||||| | ||||| Sbjct 270 GCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAA 329 Query 67890 AAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCA 67949 ||| |||||||| | || || | |||||| ||||| ||| || | || ||||| Sbjct 330 AAACTTCCTTGACCAATTGGGTAAATCAAGAAAACAGCAGTTGCAGCTGCAACAGGAGCT 389 Query 67950 GAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGA 68009 || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| |||| Sbjct 390 GAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGA 449 Query 68010 CC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCA 68066 || | | | ||| | || | | ||||| | || | |||| |||| || Sbjct 450 CCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCG 506 Query 68067 CCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCG 68126 || || || | ||| ||||| | | ||| ||||||||||| || || || || | ||| Sbjct 507 CCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATCGGGTAAAAATGCAAACCA 566 Query 68127 ATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAA 68186 || || ||| |||||| || ||||| ||||| || ||||| ||||| | || || Sbjct 567 ATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATAATATTGTTTCCGTAAAGAAGAGAT 626 Query 68187 CCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATG 68246 || | ||||||||| | |||||||| ||||| |||||||| || ||||||||||| || Sbjct 627 CCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATA 686 Query 68247 ATGAA---GCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACCA 68303 || || | |||| ||| | | ||| ||| |||||||| ||||| ||||| ||| Sbjct 687 ATAAAAACGGAAGT---TGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCA 743 Query 68304 ACATAGATGCGATTGTCAACTGAGGTGACCCAGTTACA 68341 | || | ||||| ||| ||| | ||||||||| Sbjct 744 ATGTAAAGACGATTTTCAGTGCTGGTTATCCAGTTACA 781 >seq6 Length=37079636 Score = 114 bits (126), Expect = 1e-20 Identities = 162/225 (72%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 68096 TGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACC 68155 |||||||||||| || || || || | || || || |||| |||||| || ||||| Sbjct 27053675 TGCTTCCCAGATCGGGTAAAAATGCAAACA-ATAGCTGCTGAAGTAGGAATAATGGCACC 27053733 Query 68156 AGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGAT 68215 ||||| || ||||| || || | || || || | ||||| ||| | |||||||| || Sbjct 27053734 TGAAATAATATTGTTTCCATAAAGAAGAGATCCAGAAACAGATTCACGAATACCATCAAT 27053793 Query 68216 ATCAACTGGAGGTGCTGCAATGAATGCAATGATGAA---GCAAGTTGCTGCTGCGAGCAA 68272 ||| |||||||| | ||||||||||| || | || | |||| ||| | | || Sbjct 27053794 ATCTACTGGAGGAGTAGCAATGAATGCGATATTAAAAACGGAAGT---TGCGGTCAATAA 27053850 Query 68273 GCAAGGAATCATCAACACACCGAACCAACCAACATAGATGCGATT 68317 | |||||||||||| ||||| ||||| |||| || | ||||| Sbjct 27053851 GGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 27053895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566750391366360