Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq20831 504 8e-138 seq3 488 6e-133 seq7 215 6e-51 seq6 143 3e-29 >seq20831 Length=3535 Score = 504 bits (558), Expect = 8e-138 Identities = 571/763 (75%), Gaps = 2/763 (0%) Strand=Plus/Plus Query 68044 GCAGCAAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGATGCATACTGGAAGATCAGA 68103 || || | |||||| || | ||||| || |||||||| ||||| |||||||||| Sbjct 3 GCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGGAAGATCAAT 62 Query 68104 CGACCGAAGTATCCATGTGCAGCAACAATGTTGTAAGTCTCTTCTTCTTGACCGAACTTG 68163 || || || || ||||| ||||| |||||||||||||| ||||||||||| ||||| || Sbjct 63 CGGCCAAAATAACCATGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGTCCGAATCTG 122 Query 68164 TAACCATAGTTCTGGGACTCAGTTTCAGTGGTTTCACGAACCAGTGAAGAAGTAACCAGG 68223 ||||| | || || ||| |||| |||||||| | | || |||||| |||| | Sbjct 123 TAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAG 182 Query 68224 GAACCATGCATTGCACTGAACAGAGATCCACCAAATACGCCAGCAACGCCGAGCATATGG 68283 ||||||||||| ||||| || | || || || ||||| ||||| || || | ||| || Sbjct 183 GAACCATGCATAGCACTAAATAAGGAGCCGCCGAATACACCAGCTACACCTAACATGTGA 242 Query 68284 AAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAACACCAGCATGTAGTTGAAAGTACCA 68343 || |||||||| || ||||||||||| || ||||| || | ||| |||||||||||||| Sbjct 243 AATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCA 302 Query 68344 GAAATGCCGAGAGGCATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAG 68403 || || || |||||||| | ||||| || |||||||| | || || | || ||| Sbjct 303 GAGATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAAATCAAGAAA 362 Query 68404 ACTGCGGATGCTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCA 68463 || || | ||| ||||||||||| || || ||||||||| ||||||||||||||||| Sbjct 363 ACAGCAGTTGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCC 422 Query 68464 AGACGATAGGAAAGTTCCCATTCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTGA 68523 ||||| | ||||||||| ||||| ||||| || | | ||||| | ||||| Sbjct 423 AGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAAAAGTGT 482 Query 68524 AAGATTACGAGTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCC 68583 | | | |||| ||||||| || ||||| | ||| ||||||| || ||| |||||| Sbjct 483 AGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCC 542 Query 68584 CAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATG 68643 || || || ||||| || | |||||| || ||| |||||| || ||||| ||||| Sbjct 543 CAGATCGGGTAAAAATGCAAACCAATAGCTGCAGAAGTAGGAATAATGGCACCTGAAATA 602 Query 68644 ATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGATGTCCACA 68703 || ||||| || || ||||| || |||| ||||||||||||||||||||| || || || Sbjct 603 ATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACT 662 Query 68704 GGGGGAGCAGCGATGAAGGCGACGATGAAACAGATGGTTGCTG-CAAGCAGCGTAGGGAT 68762 || |||||||| ||||| |||| || ||| | ||||| | ||| || |||||||| Sbjct 663 GGAGGAGCAGCAATGAATGCGATAATAAAAACGGAAGTTGCGGTCAATAAG-GTAGGGAT 721 Query 68763 CATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCTGTG 68805 ||||| || || ||||| |||| |||||| || || || ||| Sbjct 722 CATCAAAACACCAAACCATCCAATGTAAAGACGATTTTCAGTG 764 >seq3 Length=27950219 Score = 488 bits (540), Expect = 6e-133 Identities = 704/988 (71%), Gaps = 9/988 (1%) Strand=Plus/Plus Query 66586 ATTAAAGTGCATTACCACGGGGCAGAACTTCTTCTGGGAATACAAAGTTTTCATGCGGTT 66645 ||||||| || || ||||| || ||||| || || |||||| || ||||||||| || | Sbjct 12151886 ATTAAAGAGCGTTTCCACGTGGTAGAACCTCCTCAAGGAATATAAGGTTTTCATGAGGCT 12151945 Query 66646 GATCGATAGGTGCCAACCATGCACGAAGACCTTCATTCAATAGAATGTTCTTTGTGTAGA 66705 ||| | || |||| ||| ||||||| |||||| || || ||||| || || || | || Sbjct 12151946 TATCTAGAGCCGCCATCCAAGCACGAATACCTTCGTTTAAAAGAATATTTTTAGTATTGA 12152005 Query 66706 ACGTCTCGAACTCTGGGTCTTCTGCTGCTCTGATCTCTTGGGATACAAAGTCATAAGCAC 66765 | ||||| || | | ||||| ||||| | | | || ||||| || |||||||| |||| Sbjct 12152006 AAGTCTCAAATTTCGAATCTTCCGCTGCACGGGTTTCCTGGGAAACGAAGTCATAGGCAC 12152065 Query 66766 GAAGGTTGAGAGCAAGACCAATAATACCGATGGAACTTGTCCAAAGACCCATAACAGGAA 66825 ||||| | ||| || || | | || | | ||| |||| | ||| | || | | Sbjct 12152066 ATAGGTTCAAAGCTAGGCCGACTACTCCAAGAGCACTCATCCATAAACCAGTTACCGATA 12152125 Query 66826 CAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATCTGAG 66885 |||| |||||| ||||||| ||||| | |||||| ||| |||| ||||||| | | Sbjct 12152126 CAAATAACATATAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGAATTATG 12152185 Query 66886 ACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCGAATG 66945 |||| |||||||| || || |||||||| ||||||||||| ||||||| | || || | Sbjct 12152186 ACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAG 12152245 Query 66946 CTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACACCAT 67005 | ||| || ||||| |||||||||||| | | |||||| ||||| ||| |||||| Sbjct 12152246 CACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCACCAT 12152305 Query 67006 GAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAACGGGT 67065 |||| || | |||| || | || || | ||| | || |||||||||||||| |||| Sbjct 12152306 GAATAGCGCATAGCAGAGCGGCGCCGAGTACACCGACGACTCCCATCATATGAAATGGGT 12152365 Query 67066 TCAAGGTCCAGTTATGGAATCCTTGTAGGAAGAGAAGGAATCGAAAGATTGCTGAGACCC 67125 |||| |||| ||||| || ||||| | || || | ||||||||| || || | || | Sbjct 12152366 TCAATATCCAATTATGAAACCCTTGGA-AAAAAGGATGAATCGAAATATAGCCGCTACAC 12152424 Query 67126 CGAAAGATGGAGCGAAAAACCAACTCGATTGACCCAGAGGGTAGATGAGAAAGACACTAA 67185 | ||| || || || ||||||| ||||||||||| || || || || | |||| || Sbjct 12152425 CAAAACTAGGCGCAAAGAACCAACCAGATTGACCCAGTGGATAAATTAGGAGGACAAAAA 12152484 Query 67186 CAAAAACAGCGATAGGACCAGAGAACGCAATAGCATTGTAGGGACGGATACCGATGAGA- 67244 ||||||||||||| ||||||||||| || || ||||| || || || | | || || Sbjct 12152485 CAAAAACAGCGATTGGACCAGAGAATGCGATTGCATTATAAGGGCGCA-ATTGAACGGAT 12152543 Query 67245 CGTGCCAGTTCAAACTGGCGAAGCATGAAACCAATTAGAGCGAAAGCCCCGTGGAGCGCC 67304 || || |||||||| || || | ||| |||| |||| || ||||| |||| ||| || Sbjct 12152544 CGAGCAAGTTCAAATTGACGTAACATAAAACATATTAATGCAAAAGCGCCGTAGAGAGCA 12152603 Query 67305 ACAAAATTCCAGAGTCCTCCAAGTTGGATCCAGCGGACGAAATCCCCCTGAGACTCAGGA 67364 |||||| | |||| || || | ||| ||| || ||||| | || | ||| || Sbjct 12152604 ACAAAAGCCTAGAGACCGCCTAATTGACACCAACGAGTAAAATCTCTTTGTGCTTCAAGA 12152663 Query 67365 CCCCAAAGTAGAAGAAGAGAATGACCCATAGCATCAGCAGGCGTTGACACAGCCGCTGTG 67424 ||||| |||| | | |||||| | | | || |||||| || || | || || || Sbjct 12152664 CCCCACAGTAACAACAAAGAATGTGCTAAACTATTAGCAGGAGTCGAAATGGCAGCGGTT 12152723 Query 67425 AGAAAATTAGCACCCTCAAGAT---AACTAGACGCGAGTCCGTGAGTGTACCAGCTTGTG 67481 |||||| ||| || | || ||||| || | ||| ||||| ||||| || Sbjct 12152724 TAAAAATTGCAACCTTCTAAATAGGAACTA---GCCAATCCATGAGTATACCATGAAGTT 12152780 Query 67482 ACAAACGTAGTACCAGTAAGCCAGCCACCAATTGCCATATAAGCAGTGGGAAAAAGAAGT 67541 ||||| || | ||| || | ||| | || | || | ||| ||| ||||| || | | Sbjct 12152781 ACAAAGGTTGCACCTGTGAACCAATCCCCTAAAGCGAAATAGGCACAAGGAAAGAGCAAT 12152840 Query 67542 AGTCCAGACCAACCCACAAAGACAAAGC 67569 || ||||||||||| ||||| ||||||| Sbjct 12152841 AGACCAGACCAACCTACAAAAACAAAGC 12152868 >seq7 Length=29178675 Score = 215 bits (238), Expect = 6e-51 Identities = 209/269 (78%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 66822 GGAACAAACAACATAAAGAAATGCAACCACCTCTTATTGCTAAACGCAATACCAAAGATC 66881 || ||||| |||||||||||||| ||||| | |||||| ||| |||| |||||||| Sbjct 25949238 GGTACAAATAACATAAAGAAATGTAACCAACGTTTATTGGAAAAAGCAACCCCAAAGATT 25949297 Query 66882 TGAGACCAGAAGCGGTTTGCAGTAACCATTGAGTAAGTTTCTTCCTCTTGAGTAGAGTCG 66941 || ||||| |||||||| || || |||||||| ||||||||||| ||||||| | || Sbjct 25949298 TGTGACCAAAAGCGGTTAGCGGTGACCATTGAATAAGTTTCTTCAGCTTGAGTTGGGTTA 25949357 Query 66942 AATGCTTTGAAAGTGTTTGCTTGTTCACCATCTTCATACAGAGTATTCTCTACTGTAACA 67001 || || ||| || ||||| |||||||||||| | | |||||| ||||| ||| || Sbjct 25949358 AAAGCACGGAATGTATTTGCACCATCACCATCTTCAAATAAAGTATTTTCTACAGTAGCA 25949417 Query 67002 CCATGAATGGCAGAAAGCAATGCACCACCCAGGATACCTGCTACACCCATCATATGAAAC 67061 |||||||| || | |||| || | ||||| | ||| || || |||||||||||||| Sbjct 25949418 CCATGAATAGCGCATAGCAGAGCGGCGCCCAGTACACCGGCGACTCCCATCATATGAAAT 25949477 Query 67062 GGGTTCAAGGTCCAGTTATGGAATCCTTG 67090 |||||| | ||||| ||||| || ||||| Sbjct 25949478 GGGTTCTATGTCCAATTATGAAACCCTTG 25949506 >seq6 Length=37079636 Score = 143 bits (158), Expect = 3e-29 Identities = 168/223 (75%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 68577 TGCTTCCCAAATGGGATAAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACC 68636 ||||||||| || || ||||| || | || ||| || |||| |||||| || ||||| Sbjct 27053675 TGCTTCCCAGATCGGGTAAAAATGCAAAC-AATAGCTGCTGAAGTAGGAATAATGGCACC 27053733 Query 68637 AGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACGAATACCATCGAT 68696 ||||| || ||||| ||||| ||||| || |||| ||||| ||||||||||||||| || Sbjct 27053734 TGAAATAATATTGTTTCCATAAAGAAGAGATCCAGAAACAGATTCACGAATACCATCAAT 27053793 Query 68697 GTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAAACAGATGGTTGCTG-CAAGCAGCG 68755 || || || |||| ||| ||||| |||| | ||| | ||||| | ||| || | Sbjct 27053794 ATCTACTGGAGGAGTAGCAATGAATGCGATATTAAAAACGGAAGTTGCGGTCAATAAG-G 27053852 Query 68756 TAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTT 68798 |||| ||||||| || || ||||| |||| |||||| || || Sbjct 27053853 TAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 27053895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571855818465720