Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq4 140 6e-28 seq6 136 7e-27 seq1 125 1e-23 seq8 120 5e-22 seq7 114 2e-20 seq3 114 2e-20 >seq4 Length=23266485 Score = 140 bits (154), Expect = 6e-28 Identities = 160/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || || || | || | |||||| ||| || ||||| | ||| || | | | Sbjct 5738677 CGGAGGACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGCTAAAGTCCGACCA 5738618 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || |||| ||||||||||| ||| |||| |||||||| || |||| |||||||| || Sbjct 5738617 TCCTCTAGTTGTTTTCCGGTAAAGATTAGCCTCTGTTGGTCCAGAGGGATTCCTTCCTTG 5738558 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || || || |||||| || || |||||||||||| || ||| Sbjct 5738557 TCTTGAATCTTCGCCTTGATGTTGTCAATAGTGTCTGAGCTCTCAACTTCTAGGGTAATA 5738498 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || ||||| || |||||||| ||||| Sbjct 5738497 GTTTTACCAGTAAGCGTCTTGACAAATATCTGCAT 5738463 Score = 127 bits (140), Expect = 4e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||||||||| | || |||| || | || | || || || || ||||| Sbjct 5744576 ATACCACCTCTCAACCTGAGAACCAAGTGGAGGGTTGATTCCTTCTGGATGTTGTAGTCC 5744517 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | || | | ||| || | ||||| || ||||| |||| || ||||| |||||| Sbjct 5744516 GCAAGAGTACAACCATCTTCGAGCTGTTTACCCGCAAAGATTAGCCTTTGTTGGTCAGGA 5744457 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||||||||| || || | || | || ||| ||||| ||| |||| Sbjct 5744456 GGGATTCCTTCTTTATCTTGAATCTTCGCCTTGACGTTGTCAATTGTATCTGAACTCTCA 5744397 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || || ||||||| || || ||||| ||||| |||||||| Sbjct 5744396 ACTTCTAGGGTAATGATTTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 5744347 Score = 125 bits (138), Expect = 1e-23 Identities = 116/147 (79%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 193214 TTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTAT 193273 |||||| |||||||| |||||||| || || || ||||| || |||||||||||||| || Sbjct 5748390 TTGTTTACCGGCAAAGATTAATCTTTGCTGGTCCGGAGGGATCCCTTCTTTATCTTGAAT 5748331 Query 193274 TTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACC 193333 || | ||| | ||| ||| ||||| || |||||||||||| || || |||||||| Sbjct 5748330 CTTCGCTTTAACATTGTCAATGGTATCTGAGCTCTCAACTTCTAGGGTAATGGTTTTACC 5748271 Query 193334 TGTTAGCGTTTTTACAAATATTTGCAT 193360 || |||| || |||||||| ||||| Sbjct 5748270 CGTAAGCGCCTTGACAAATATCTGCAT 5748244 Score = 118 bits (130), Expect = 2e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | |||||||||||| || ||||||| |||||||| || || |||||||| || Sbjct 22703274 TCTTCGAGTTGTTTTCCGGCGAAGATTAATCGTTGTTGATCCGGTGGGATTCCTTCCTTG 22703333 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | ||| || |||||||| || ||||| || ||||| || Sbjct 22703334 TCTTGGATCTTGGCCTTGACATTGTCGATTGTATCGGATGATTCAACCTCGAGAGTGATC 22703393 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTT 193363 || || |||||||| ||||| || || || ||||| || Sbjct 22703394 GTCTTCCCTGTTAGGGTTTTCACGAAGATCTGCATCTT 22703431 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 ||||| | || ||||| || || |||| || | ||| || || || ||||| | Sbjct 5744969 CCACCGCGTAAACGAAGGACAAGGTGCAGAGTTGACTCCTTTTGGATGTTGTAGTCCGCA 5744910 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | || | ||| || | ||||| || ||||| || | ||||| || || ||||| Sbjct 5744909 AGAGTACGGCCATCCTCGAGCTGTTTACCCGCAAAGATAAGTCTCTTCTGTTCCGGAGGG 5744850 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 || ||||| || ||||| || || | ||| | ||| ||| || || || ||||||| Sbjct 5744849 ATCCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCAACT 5744790 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || || |||||| || ||||| || |||||||| ||||| Sbjct 5744789 TCTAGGGTAATGGTTTTATTGGTAAGCGTCTTGACAAATATCTGCAT 5744743 >seq6 Length=37079636 Score = 136 bits (150), Expect = 7e-27 Identities = 168/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || |||||||||| || || |||| ||||| || | || || ||| ||||| || Sbjct 33565313 ATCCCACCTCTCAGACGTAGCACCAAATGCAGGGTTGATTCCTTCTGAATGTTATAATCC 33565254 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | | ||||| | ||| || | ||||||||| ||||| || | ||||||||| || ||| Sbjct 33565253 GCAAGCGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTGGTCCGGA 33565194 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| || ||||| || || | || | || ||| || || || |||| Sbjct 33565193 GGGATCCCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCA 33565134 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| || ||||||||||| || || ||||| ||||| || ||||| Sbjct 33565133 ACTTCTAGGGTAATAGTTTTACCAGTGAGGGTTTTCACAAAGATCTGCAT 33565084 Score = 100 bits (110), Expect = 5e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 |||||||| | | || | |||| |||||||||| ||| || ||||| ||||| Sbjct 13447916 ATACCACCCCGAAGACGCAACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCA 13447857 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | || || | | ||| || | || ||||||||||| || || ||||| || || || Sbjct 13447856 GCCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGT 13447797 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || || | || | || |||||| || || ||| Sbjct 13447796 GGAATACCTTCCTTATCTTGGATCTTTGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCC 13447737 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || ||||| || | || || || || |||||||| Sbjct 13447736 ACCTCGAGAGTAATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 13447687 Score = 93.3 bits (102), Expect = 8e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 193215 TGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATT 193274 || ||||| || || || || ||||| ||||| ||||| || ||||| |||||||| || Sbjct 13447312 TGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGAGGAATACCTTCCTTATCTTGAATC 13447253 Query 193275 TTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCT 193334 || | ||| | || || || || ||| |||||| || ||||| ||||||||||| Sbjct 13447252 TTAGCTTTCACGTTATCGATGGTGTCAGAACTCTCAACCTCGAGAGTAATAGTTTTACCA 13447193 Query 193335 GTTAGCGTTTTTACAAATATTTGCAT 193360 || | || || ||||| || ||||| Sbjct 13447192 GTCAAGGTCTTCACAAAGATCTGCAT 13447167 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| |||||||| | | || | |||| ||| | ||| |||||| || || Sbjct 13447630 ATTTGCATACCACCACGTAGACGCAACACCAAATGAAGAGTACTCTCTTTCTGGATGTTG 13447571 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || ||||| || || | || || ||||| || || |||||||| || Sbjct 13447570 TAATCAGCCAAAGTTCTGCCGTCTTCAAGCTGCTTACCGGCGAAGATCAATCTCTGCTGG 13447511 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || || ||||| ||||| || || | || | ||| |||||||||||| Sbjct 13447510 TCCGGAGGAATACCCTCTTTGTCTTGGATCTTTGCCTTCACATTATCAATAGTATCGGAG 13447451 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 |||||||| | ||| || || || || || | || || ||||| || ||||| Sbjct 13447450 CTTTCAACTTCCAAAGTAATGGTCTTGCCCGTCAAGGTCTTGACAAAGATCTGCAT 13447395 Score = 86.0 bits (94), Expect = 1e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||| ||||||||||| || || ||||| ||||| ||||| ||||| || || Sbjct 19970289 TCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGAATTCCCTCCTTG 19970348 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || || | || | || ||| || || ||| |||||| || || || ||| Sbjct 19970349 TCTTGGATCTTAGCCTTAACGTTATCAATGGTGTCAGAACTCTCAACCTCGAGGGTAATA 19970408 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || ||||| || | || || || || || ||||| Sbjct 19970409 GTCTTACCAGTCAAGGTCTTAACGAAGATCTGCAT 19970443 >seq1 Length=25238555 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 193134 CCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGAT 193193 || ||||| ||||| || |||| ||| | || | ||||| || | || || | Sbjct 18011471 CCTCCTCTTAATCGTAGAACCAAATGAAGCGTTGATTCTTTCTGGATGCTGTAATCAGCG 18011412 Query 193194 AACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGT 193253 | ||||| || |||||||||||||| ||||| || || | ||||| || || || Sbjct 18011411 AGTGTTCTTCCGTCTTCTAATTGTTTTCCTGCAAAGATCAAACGTTGTTGGTCCGGTGGA 18011352 Query 193254 ATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACT 193313 |||||||| || ||||| || || | ||| | ||| ||| || || ||||| ||||| Sbjct 18011351 ATTCCTTCCTTGTCTTGAATCTTCGCTTTCACATTGTCAATTGTGTCTGAAGATTCAACC 18011292 Query 193314 TCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTT 193362 ||||| ||||| || || || ||||| ||||| ||||| || ||||||| Sbjct 18011291 TCTAGGGTTATTGTCTTCCCCGTTAGGGTTTTCACAAAGATCTGCATTT 18011243 >seq8 Length=40886855 Score = 120 bits (132), Expect = 5e-22 Identities = 168/236 (71%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||||||||| || |||| ||||| || | ||| || ||||| Sbjct 1190048 ATTTGCATACCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATATTG 1190107 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 ||||||| | || || ||| || | ||| || || || || || | ||| || ||| Sbjct 1190108 TAGTCGGCAAGAGTCCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGA 1190167 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| || ||||| || || || || || | || | ||| ||||| || || Sbjct 1190168 TCCGGAGGAATACCTTCCTTGTCCTGGATCTTTGCCTTAACATTATCGATAGTGTCAGAG 1190227 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||| || || |||||||| || || || || || ||||| || ||||||||||| Sbjct 1190228 CTCTCGACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTCACGAATATTTGCAT 1190283 >seq7 Length=29178675 Score = 114 bits (126), Expect = 2e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || ||||||||||| || || |||| ||||| || | || || |||||| || || Sbjct 2571071 ATTCCACCTCTCAAACGTAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCC 2571012 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 | |||| | ||| || | ||||| || ||||| || | ||||||| || ||| Sbjct 2571011 CCAAGGGTTCGACCATCCTCGAGCTGTTTACCAGCAAAGATGAGCCTCTGTTCGTCTGGA 2570952 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || || ||||| |||||||| || || | || | | ||| | || || |||| Sbjct 2570951 GGGATCCCTTCCTTATCTTGGATCTTCGCCTTGACGTCGTCAATGCTGTCTGAGCTCTCA 2570892 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||| || ||||||||||| || || ||||| ||||||||||||||| Sbjct 2570891 ACTTCTAAGGTAATAGTTTTACCAGTGAGTGTTTTCACAAATATTTGCATT 2570841 Score = 95.1 bits (104), Expect = 2e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| || | |||||| || || || || | ||||||| || ||||| || ||||| || Sbjct 2570769 ATCCTCGAGTTGTTTACCAGCGAAGATGAGCCTCTGTTCGTCCGGAGGGATCCCTTCCTT 2570710 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || || | || | | ||| | || || ||||||||||| || || Sbjct 2570709 ATCTTGGATCTTCGCCTTGACGTCGTCAATGCTGTCTGAGCTCTCAACTTCTAAGGTAAT 2570650 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 ||||||||| || || ||||| ||||||||||||||| Sbjct 2570649 AGTTTTACCAGTGAGTGTTTTCACAAATATTTGCATT 2570613 >seq3 Length=27950219 Score = 114 bits (126), Expect = 2e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 193205 ATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTT 193264 ||| |||| ||||| |||||||| || | ||||||||| || |||| ||||||||||| Sbjct 5226665 ATCCTCTAGCTGTTTACCGGCAAAGATAAGTCTCTGTTGGTCCGGAGAGATTCCTTCTTT 5226724 Query 193265 ATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTAT 193324 |||||| || |||| ||| | || ||| || || || || || || || ||||| Sbjct 5226725 ATCTTGGATCTTGGCTTTGACGTTGTCAATGGTGTCTGAGCTTTCGACCTCGAGTGTTAT 5226784 Query 193325 AGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 ||||| || ||||| ||||| ||||| |||||||| Sbjct 5226785 GGTTTTGCCAGTTAGGGTTTTCACAAAGATTTGCAT 5226820 Score = 87.8 bits (96), Expect = 3e-12 Identities = 161/236 (68%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||| |||||||| || || |||| || | || | ||| || || || Sbjct 5226813 ATTTGCATACCTCCTCTCAAACGCAGAACCAAGTGGAGAGTTGACTCCTTTTGGATGTTG 5226872 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 || || | || || | || || | ||||| |||||||| || | || ||||| Sbjct 5226873 TAATCAGCCAAGGTACGGCCGTCCTCGAGCTGTTTACCGGCAAAGATAAGCCTTTGTTGG 5226932 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || ||||| ||||||||||| ||||| || |||| || | ||| | || ||||| Sbjct 5226933 TCCGGAGGGATTCCTTCTTTGTCTTGGATCTTGGCATTGACGTTTTCGACGGTGTCGGAG 5226992 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || || || ||||| || || || || || ||||| || || |||||||| Sbjct 5226993 CTTTCGACCTCAAGTGTTATGGTCTTGCCCGTAAGAGTTTTCACGAAGATTTGCAT 5227048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899342096220720