Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq5 179 5e-40 seq6 125 1e-23 seq4 111 2e-19 seq7 109 8e-19 seq3 100 4e-16 seq8 91.5 2e-13 seq1 89.7 8e-13 >seq5 Length=22804910 Score = 179 bits (198), Expect = 5e-40 Identities = 374/553 (68%), Gaps = 9/553 (2%) Strand=Plus/Plus Query 18155 AAACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTT 18214 ||||| || |||||| |||||||||||| ||||| || |||||||||||| || ||| Sbjct 2412308 AAACAAGCGAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAGAAAGTT 2412367 Query 18215 AACCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAG 18274 || || ||||| | || | ||| || ||||| || ||||| ||| || ||| ||| Sbjct 2412368 AAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCAGAGAAG 2412427 Query 18275 AATATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTC 18334 |||||||| ||||| || |||||||||| | | |||||| || ||| || | | || Sbjct 2412428 AATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAA--TGT-TTGA--GATC 2412482 Query 18335 AGT--ATCCATTTTTGTGCCCATTCTCCTTNNNNNNNNATACACGGTATACTCTCTATAG 18392 | ||||| | |||||| ||| | ||| || || | || || | Sbjct 2412483 CATCGATCCAAGTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCGATTG 2412542 Query 18393 CATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAAT 18452 || || | || |||| |||||||| |||||| || |||||||||| | | ||||| Sbjct 2412543 CACGGAATAGATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGAGAAT 2412602 Query 18453 ACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGG 18512 |||| || ||||| || | || ||||| || || || | || || | | || |||| Sbjct 2412603 ACATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCTTCGG 2412662 Query 18513 GATATTGAATCTC-GCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571 ||| | || | || |||| | | | || || || || ||||||| Sbjct 2412663 AGACTTGTACATCTGACAT-GAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCAGAT 2412721 Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC 18631 | ||||| || || | || | ||| ||||| || ||| || |||||||| | | Sbjct 2412722 GCGGCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTTTCC 2412781 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 || ||| | |||| ||| ||||| |||||||| | |||||| || |||| |||||| Sbjct 2412782 CAGTCACGGTTGTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCTTCGGCT 2412841 Query 18692 TGTTTGTACATTT 18704 | |||||||||| Sbjct 2412842 TTCTTGTACATTT 2412854 >seq6 Length=37079636 Score = 125 bits (138), Expect = 1e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || || || ||||| || ||||| ||| || Sbjct 13447395 ATGCAGATCTTTGTCAAGACCTTGACGGGCAAGACCATTACTTTGGAAGTTGAAAGCTCC 13447454 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || ||||| || || ||||| ||||| || || ||||| || || Sbjct 13447455 GATACTATTGATAATGTGAAGGCAAAGATCCAAGACAAAGAGGGTATTCCTCCGGACCAG 13447514 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | |||||||||||||| ||||| ||||||||| | ||||| || Sbjct 13447515 CAGAGATTGATCTTCGCCGGTAAGCAGCTTGAAGACGGCAGAACTTTGGCTGATTACAAC 13447574 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| || |||||||| ||||| Sbjct 13447575 ATCCAGAAAGAGAGTACTCTTCATTTGGTGTT 13447606 Score = 107 bits (118), Expect = 3e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || ||||| || || || || || || ||||| ||| || Sbjct 19970215 ATGCAGATCTTTGTCAAGACCTTGACCGGTAAGACCATCACCTTGGAAGTTGAAAGCTCC 19970156 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| || ||||| || || ||||| || || ||||| || || Sbjct 19970155 GACACCATTGACAACGTCAAGGCCAAAATCCAGGACAAAGAGGGTATTCCTCCGGACCAG 19970096 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||||||||||||| ||||| ||||| ||||| || ||||||| | | || || ||| Sbjct 19970095 CAAAGATTGATTTTCGCCGGAAAGCAACTCGAGGACGGCAGAACTCTGGCCGACTACAAT 19970036 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTT 156034 || |||||| | || || ||||| ||||| Sbjct 19970035 ATCCAGAAAGAGTCTACTCTCCATTTGGTGTT 19970004 Score = 105 bits (116), Expect = 1e-17 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||| | |||||| | || ||| | ||||| ||||| ||||| |||||||||| || Sbjct 33564856 ATGTAGATATTTGTCAAGACACTTACTGGTAAAACGATTACCCTAGAAGTCGAGAGCTCA 33564915 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || ||| |||||| ||||| || ||||| || ||||| || || Sbjct 33564916 GACACCATTGACAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCAG 33564975 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | |||||||||||||||||| ||| ||||| | | ||||| || Sbjct 33564976 CAGAGGCTGATCTTTGCCGGTAAGCAGCTCGAGGATGGTCGAACTCTTGCGGATTACAAC 33565035 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGGT 156050 || || || | || || || || || | || || ||||| ||| Sbjct 33565036 ATCCAGAAGGAATCAACCCTCCACTTGGTCCTCAGGTTGAGAGGAGGT 33565083 Score = 100 bits (110), Expect = 4e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||| ||||||||||| | || || || |||| Sbjct 13447167 ATGCAGATCTTTGTGAAGACCTTGACTGGTAAAACTATTACTCTCGAGGTTGAGAGTTCT 13447226 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || ||||||||| ||| || |||||||| ||||| || ||||| || || Sbjct 13447227 GACACCATCGATAACGTGAAAGCTAAGATTCAAGATAAGGAAGGTATTCCTCCGGATCAG 13447286 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | || || |||||||| || || | ||| | | ||||| ||| Sbjct 13447287 CAGAGGTTGATCTTCGCTGGAAAGCAGCTTGAGGACGGTCGTACTCTTGCGGATTACAAT 13447346 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGTG 156032 || || ||| | || |||||| | ||| Sbjct 13447347 ATCCAGAAGGAGTCTACTCTTCATCTTGTG 13447376 >seq4 Length=23266485 Score = 111 bits (122), Expect = 2e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | |||||| | ||||| |||| ||||| ||||||| || ||| Sbjct 5744347 ATGCAAATCTTTGTGAAAACACTCACTGGTAAAATCATTACCCTAGAAGTTGAGAGTTCA 5744406 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || || || |||||||||||||| || ||||| || ||| Sbjct 5744407 GATACAATTGACAACGTCAAGGCGAAGATTCAAGATAAAGAAGGAATCCCTCCTGACCAA 5744466 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||||| | || | ||| ||||| |||||||||||| Sbjct 5744467 CAAAGGCTAATCTTTGCGGGTAAACAGCTCGAAGAT 5744502 Score = 84.2 bits (92), Expect = 3e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || | | || || ||||| ||||| ||||||| || || Sbjct 5748244 ATGCAGATATTTGTCAAGGCGCTTACGGGTAAAACCATTACCCTAGAAGTTGAGAGCTCA 5748303 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || || ||| || || |||||||||||||| || ||||| || || Sbjct 5748304 GATACCATTGACAATGTTAAAGCGAAGATTCAAGATAAAGAAGGGATCCCTCCGGACCAG 5748363 Query 155943 CAAAGATTGATTTATGCCGGTAAGCA 155968 |||||||| || | ||||||||| || Sbjct 5748364 CAAAGATTAATCTTTGCCGGTAAACA 5748389 >seq7 Length=29178675 Score = 109 bits (120), Expect = 8e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | |||||| | ||||| ||||||||||| |||||||| || || Sbjct 2570841 AATGCAAATATTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 2570900 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||| || || || |||||||| ||||| || |||||||| | Sbjct 2570901 AGACAGCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCAGACGA 2570960 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 ||| || | || | ||| ||||| |||||||| ||| |||| | ||||| || Sbjct 2570961 ACAGAGGCTCATCTTTGCTGGTAAACAGCTCGAGGATGGTCGAACCCTTGGGGATTACAA 2571020 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 ||| || || | || || ||||| ||| || | || ||||| || Sbjct 2571021 TATTCAGAAGGAATCAACTCTGCATTTGGTGCTACGTTTGAGAGGTGG 2571068 Score = 89.7 bits (98), Expect = 8e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||||||| | |||||| | ||||| ||||||||||| |||||||| || || Sbjct 2570613 AATGCAAATATTTGTGAAAACACTCACTGGTAAAACTATTACCTTAGAAGTTGAGAGCTC 2570672 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 || | ||| |||| || || || |||||||| ||||| || ||||| || | Sbjct 2570673 AGACAGCATTGACGACGTCAAGGCGAAGATCCAAGATAAGGAAGGGATCCCTCCGGACGA 2570732 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 ||| || | || | || ||||| || ||||| ||| Sbjct 2570733 ACAGAGGCTCATCTTCGCTGGTAAACAACTCGAGGAT 2570769 >seq3 Length=27950219 Score = 100 bits (110), Expect = 4e-16 Identities = 136/189 (72%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | ||||| | ||||| ||||| || ||| | || |||||| || Sbjct 5226820 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 5226761 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||||| ||| || || |||||||||||||| || |||| || ||| Sbjct 5226760 GACACCATTGACAACGTCAAAGCCAAGATCCAAGATAAAGAAGGAATCTCTCCGGACCAA 5226701 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||| | || | ||||||||| ||||| || ||| | ||| | | ||||| | Sbjct 5226700 CAGAGACTTATCTTTGCCGGTAAACAGCTAGAGGATGGTCGTACTCTTGCGGATTACA-- 5226643 Query 156003 ATATCCAAA 156011 ||||||||| Sbjct 5226642 ATATCCAAA 5226634 >seq8 Length=40886855 Score = 91.5 bits (100), Expect = 2e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || ||||| ||||| || ||||| | || || ||| || Sbjct 1190055 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATTACTCTTGAGGTTGAAAGCTCC 1189996 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||| || || || ||||| || || ||||| || || Sbjct 1189995 GATACTATTGATAATGTCAAGGCTAAGATCCAGGACAAAGAGGGAATTCCTCCGGATCAG 1189936 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||| | || | || ||||||||||| |||||| || ||| | | ||||| || Sbjct 1189935 CAAAGACTTATCTTCGCTGGTAAGCAGCTTGAAGATGGAAGGACTCTTGCGGATTACAAC 1189876 Query 156003 ATATCCAAAGAGGCGACGCTTCA 156025 || |||||| | || || || Sbjct 1189875 ATCCAGAAAGAGTCCACACTCCA 1189853 >seq1 Length=25238555 Score = 89.7 bits (98), Expect = 8e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 155821 AAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATT 155880 ||||||| || ||| | ||||| | || || || || || || |||| || ||| || Sbjct 18011243 AAATGCAGATCTTTGTGAAAACCCTAACGGGGAAGACAATAACCCTAGAGGTTGAATCTT 18011302 Query 155881 CTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAAC 155940 | || | ||| || |||||| || || ||||| || ||||| || || || || | Sbjct 18011303 CAGACACAATTGACAATGTGAAAGCGAAGATTCAAGACAAGGAAGGAATTCCACCGGACC 18011362 Query 155941 AACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATA 156000 ||||| | ||||| | ||| || || || | ||||| ||||| | | ||||| | Sbjct 18011363 AACAACGTTTGATCTTTGCAGGAAAACAATTAGAAGACGGAAGAACACTCGCTGATTACA 18011422 Query 156001 ATATATCCAAAGAGGCGACGCTTCATTTAGTGTTAAGATTAAGAGGCGG 156049 || ||||| | ||||||||||| || || |||||||||| || Sbjct 18011423 GCATCCAGAAAGAATCAACGCTTCATTTGGTTCTACGATTAAGAGGAGG 18011471 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731617939783600