Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq3 145 2e-29 seq5 127 4e-24 seq6 122 2e-22 seq4 116 7e-21 seq8 109 1e-18 seq7 105 1e-17 seq1 105 1e-17 >seq3 Length=27950219 Score = 145 bits (160), Expect = 2e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||||| || ||||| | || | || ||| || |||||||| Sbjct 14806204 ATCCCACCTCTCAGACGTAGCACCAAATGCAGGGTTGATTCCTTATGAATGTTATAATCC 14806145 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | |||||| ||||||||||| | |||||||| || || Sbjct 14806144 GCAAGCGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTAGTCCGGA 14806085 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || ||||| || ||| ||| ||||| || | | ||| || Sbjct 14806084 GGGATTCCTTCCTTGTCTTGAATCTTAGCTTTAACATTGTCAATGGTGTATGAGCTCTCG 14806025 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| ||||||||||||||||| | ||| || | |||||||||||| Sbjct 14806024 ACTTCTAGGGTAATGGTTTTACCAGTAAGTGTCTTGACAAATATCTGCAT 14805975 Score = 105 bits (116), Expect = 1e-17 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 |||||| ||||| | | || || |||| || | |||||||| |||||||| | ||| Sbjct 5226638 GATATTGTAATCCGCAAGAGTACGACCATCCTCTAGCTGTTTACCGGCAAAGATAAGTCT 5226697 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 |||||| || || | ||||||||||||||||| || || ||| || || || | Sbjct 5226698 CTGTTGGTCCGGAGAGATTCCTTCTTTATCTTGGATCTTGGCTTTGACGTTGTCAATGGT 5226757 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| ||| || || || || |||||||| ||||||| ||||| | ||| || || Sbjct 5226758 GTCTGAGCTTTCGACCTCGAGTGTTATGGTTTTGCCAGTTAGGGTTTTCACAAAGATTTG 5226817 Query 192534 CAT 192536 ||| Sbjct 5226818 CAT 5226820 Score = 100 bits (110), Expect = 6e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || | || | || | |||||| ||||| ||||||| Sbjct 5226080 ACCACCACGGAGACGGAGAACAAGGTGAAGTGTTGACTCTTTCTGAATATTGTAATCAGC 5226139 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 ||| || || |||| || | || || || ||||||||| |||||||| || ||||| Sbjct 5226140 TAAAGTCCGACCATCTTCTAGCTGCTTCCCGACAAAGATTAGCCTCTGTTGGTCCGGTGG 5226199 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || |||||||| |||||||| || || || ||| || | ||| || ||||| Sbjct 5226200 AATCCCTTCTTTGTCTTGTATCTTTGCCTTCACGTTATCAATCGTATCAGAGCTCTCTAC 5226259 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTT 192521 || |||||||||||||| || || || | ||| Sbjct 5226260 CTCAAGAGTAATGGTTTTCCCTGTCAAAGATTT 5226292 >seq5 Length=22804910 Score = 127 bits (140), Expect = 4e-24 Identities = 360/559 (64%), Gaps = 9/559 (2%) Strand=Plus/Plus Query 49815 TATATTAAACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTA 49874 || || ||||| || |||||| |||||||| ||||| || || || ||||| ||| Sbjct 2412302 TAAATCAAACAAGCGAAATCACAGTGTAAACCTTCGTCTCTTGAGATTAATTCGTTAGAG 2412361 Query 49875 AAAGTTAATCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTA 49934 |||||||| || ||||| | ||| | || |||||||| || || || || || | Sbjct 2412362 AAAGTTAAACCAGGCATGAGTCCACGTTTCTTAAGCCAGAAAATCGAACAGAAGGAACCA 2412421 Query 49935 GAAAAGAATATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTA 49994 || ||||||||||| || ||||| || || |||| || | | | | || || Sbjct 2412422 GAGAAGAATATACCTTCAACACAAGCGAACGCTACGATACGTTCAGCGAATGTTTGAGAT 2412481 Query 49995 TCATCTAATATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCT 50054 |||| | ||||| | |||||||| ||||| || | | | |||| || |||| Sbjct 2412482 CCATCGA---TCCAAGTCATAGCCCATGAAGCTTTCTTGGTAACACAAGGAATCGTTTCG 2412538 Query 50055 ATAGCTTTAAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAA 50114 || || |||| | || | |||| | | | | | Sbjct 2412539 ATTGCACGGAATAGATGATCTCTTTCTTTGTTATCTTTGATGTAAGTGTCGAGAAGAAGA 2412598 Query 50115 GAATACATTTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCT 50174 |||||||| || ||||| | | || ||||| ||||| ||| || ||| | ||| Sbjct 2412599 GAATACATCTCTGAATGGATATTCTCAATAGCGATTTGGAATCCGTAGAATGCACGCGCT 2412658 Query 50175 TCTGAATACTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCA 50234 || || || || || || | ||||||| | | | || || ||| || || ||| Sbjct 2412659 TCGGAGACTTGTACATCTGACATGAATCGTGAAGCGAGGTTTTCGAGTACGATTCCGTCA 2412718 Query 50235 GATGCTGCGAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTT 50294 ||||| |||||||| || | |||| ||| || || || ||| || || | |||| Sbjct 2412719 GATGCGGCGAAGAAAGCGAGTACGTGTTTGATGAAGTGACGTTCTCCGTCGTTGAGATTT 2412778 Query 50295 TCCCAAGATTCAAGATCGTTT---GATAAATCTACTTCTTCTATTGTCCAAAATGATGCT 50351 ||||| ||| | | || | || | |||||||||||| |||||| ||||||||| Sbjct 2412779 TCCCAG---TCACGGTTGTCTTGTGAGAGATCTACTTCTTCGGCTGTCCAGAATGATGCT 2412835 Query 50352 ACGGATTTTTTATACATTT 50370 ||| ||| || ||||||| Sbjct 2412836 TCGGCTTTCTTGTACATTT 2412854 >seq6 Length=37079636 Score = 122 bits (134), Expect = 2e-22 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||||| || ||||| | || | || || || |||||||| Sbjct 33565313 ATCCCACCTCTCAGACGTAGCACCAAATGCAGGGTTGATTCCTTCTGAATGTTATAATCC 33565254 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||||| |||| || | |||||| ||||||||||| | ||||||||| || || Sbjct 33565253 GCAAGCGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAGATGAGTCTCTGTTGGTCCGGA 33565194 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| || || || || || || | ||||| || Sbjct 33565193 GGGATCCCTTCCTTGTCTTGAATCTTCGCCTTGACGTTGTCAATGGTGTCTGAGCTCTCA 33565134 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| ||||| ||||||||||| | ||||| | ||| |||||||| Sbjct 33565133 ACTTCTAGGGTAATAGTTTTACCAGTGAGGGTTTTCACAAAGATCTGCAT 33565084 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || || || || |||| ||| || |||||| || ||| Sbjct 13447916 ATACCACCCCGAAGACGCAACACCAAGTGCAATGTAGACTCCTTTTGGATATTGTAGTCA 13447857 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || || || |||||||| || ||||| || || ||| Sbjct 13447856 GCCAAGGTACGACCATCCTCAAGCTGCTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGT 13447797 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || || || |||| || || || Sbjct 13447796 GGAATACCTTCCTTATCTTGGATCTTTGCCTTCACGTTGTCAATAGTGTCAGAGCTCTCC 13447737 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| |||||||| || || |||| || || ||||| Sbjct 13447736 ACCTCGAGAGTAATGGTCTTACCAGTCAAGGTCTTAACGAAGATTTGCAT 13447687 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | ||| | | || | ||| | ||||| ||| || |||||| ||||| Sbjct 13447396 ATACCACCACGAAGCCTGAGCACAAGATGAAGAGTAGACTCCTTCTGGATATTGTAATCC 13447337 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || | || || | || || ||||| ||||| || ||||| ||||| || Sbjct 13447336 GCAAGAGTACGACCGTCCTCAAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGATCCGGA 13447277 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || ||| ||| || ||| || | || || || Sbjct 13447276 GGAATACCTTCCTTATCTTGAATCTTAGCTTTCACGTTATCGATGGTGTCAGAACTCTCA 13447217 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || |||||||| ||||||||||| || || || | ||| |||||||| Sbjct 13447216 ACCTCGAGAGTAATAGTTTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 13447167 Score = 109 bits (120), Expect = 1e-18 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 192354 GATATTATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCT 192413 ||| || ||||| | | ||||| |||| || | || ||||| |||||||| | || Sbjct 33565038 GATGTTGTAATCCGCAAGAGTTCGACCATCCTCGAGCTGCTTACCGGCAAAGATCAGCCT 33564979 Query 192414 CTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGA 192473 ||| || || || || |||||||| || ||||| |||||| ||| ||||| || | Sbjct 33564978 CTGCTGGTCCGGAGGGATTCCTTCCTTGTCTTGAATTTTAGCTTTAACATTGTCAATGGT 33564919 Query 192474 ATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTG 192533 ||||| || |||||||| ||||| ||||||||||| | ||| || | |||||||| Sbjct 33564918 GTCTGAGCTCTCGACTTCTAGGGTAATCGTTTTACCAGTAAGTGTCTTGACAAATATCTA 33564859 Query 192534 CAT 192536 ||| Sbjct 33564858 CAT 33564856 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||||| | || | || | ||| | |||||| || || || || | | Sbjct 33565538 CCACCACGGAGACGGAGAACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGCT 33565479 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 ||||| || |||| || | |||||| || |||||||||| ||||| || || || || Sbjct 33565478 AATGTCCGACCATCTTCGAGTTGTTTTCCCGCAAAGATTAGCCTCTGCTGGTCCGGAGGG 33565419 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| |||||||| || || ||| ||||| || | ||| || ||| || Sbjct 33565418 ATCCCTTCCTTATCTTGAATCTTCGCTTTCACATTGTCAATTGTATCCGAGCTTTCGACC 33565359 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || ||||| || || || || || || || || | |||||||||||| Sbjct 33565358 TCAAGAGTTATCGTCTTTCCCGTCAAAGTCTTGACAAATATCTGCAT 33565312 Score = 87.8 bits (96), Expect = 4e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGA 192368 |||||| | ||||| | || || || | ||||| ||| || ||| || || |||| Sbjct 19969532 ACCACCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGC 19969591 Query 192369 TAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGG 192428 || || || |||| || | ||||||||||| ||||||| | ||| || || ||||| Sbjct 19969592 CAAAGTGCGACCATCCTCAAGCTGTTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGG 19969651 Query 192429 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTAC 192488 || ||||| || || || || ||| || ||||| || | || || || || Sbjct 19969652 GATACCTTCCTTGTCCTGGATCTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCGAC 19969711 Query 192489 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||| || || ||||| || ||||| | || || | || |||||||| Sbjct 19969712 TTCAAGGGTGATGGTCTTTCCAGTAAGAGTCTTCACGAAAATCTGCAT 19969759 >seq4 Length=23266485 Score = 116 bits (128), Expect = 7e-21 Identities = 111/142 (78%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||||||||| | || || | ||| | ||||| |||||| ||| || ||||||| | Sbjct 12669217 CCACCTCTAAGCCTCAAGACAAGATGAAGAGTAGACTCTTTCTGGATGTTGTAATCAGCT 12669158 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || ||||| |||| || | ||| ||||||||||| || | |||||||||||||||||| Sbjct 12669157 AAGGTTCGACCATCTTCAAGTTGCTTACCAGCAAAAATCAGCCTCTGTTGATCAGGTGGT 12669098 Query 192430 ATTCCTTCTTTATCTTGTATTT 192451 || |||||||| || | || || Sbjct 12669097 ATACCTTCTTTGTCCTATAATT 12669076 Score = 113 bits (124), Expect = 9e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | |||||||| |||||||||| || ||||| ||||| || |||||||||| Sbjct 5744503 CATCTTCGAGCTGTTTACCCGCAAAGATTAGCCTTTGTTGGTCAGGAGGGATTCCTTCTT 5744444 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 ||||||| || || || || || || | |||||| || |||||||| |||| Sbjct 5744443 TATCTTGAATCTTCGCCTTGACGTTGTCAATTGTATCTGAACTCTCAACTTCTAGGGTAA 5744384 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || |||||||||| | |||||| | ||| || ||||| Sbjct 5744383 TGATTTTACCAGTGAGTGTTTTCACAAAGATTTGCAT 5744347 Score = 113 bits (124), Expect = 9e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 192390 TTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTAT 192449 ||||||||| |||||||||||||| || || || || || || |||||||||||||| || Sbjct 5748390 TTGTTTACCGGCAAAGATTAATCTTTGCTGGTCCGGAGGGATCCCTTCTTTATCTTGAAT 5748331 Query 192450 TTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACC 192509 || ||| ||||| || | |||||| || |||||||| |||||||||||||| Sbjct 5748330 CTTCGCTTTAACATTGTCAATGGTATCTGAGCTCTCAACTTCTAGGGTAATGGTTTTACC 5748271 Query 192510 AGTTAATGTTTTAATAAATATCTGCAT 192536 || | | || | |||||||||||| Sbjct 5748270 CGTAAGCGCCTTGACAAATATCTGCAT 5748244 Score = 98.7 bits (108), Expect = 2e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | ||||| | || | || | ||| | |||||| || || || || | | Sbjct 5738689 CCACCACGGAGACGGAGGACAAGGTGAAGAGTTGACTCTTTCTGAATGTTGTAGTCCGCT 5738630 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 || || || |||| || | |||||| || | |||||||| |||||||| || | || Sbjct 5738629 AAAGTCCGACCATCCTCTAGTTGTTTTCCGGTAAAGATTAGCCTCTGTTGGTCCAGAGGG 5738570 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 |||||||| || ||||| || || || | || |||| ||||| || ||| Sbjct 5738569 ATTCCTTCCTTGTCTTGAATCTTCGCCTTGATGTTGTCAATAGTGTCTGAGCTCTCAACT 5738510 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| ||||| ||||||||||| | || || | |||||||||||| Sbjct 5738509 TCTAGGGTAATAGTTTTACCAGTAAGCGTCTTGACAAATATCTGCAT 5738463 Score = 89.7 bits (98), Expect = 1e-12 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 192380 CATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTT 192439 |||| || | |||||||| |||||||| | ||||| || || || || || ||||| | Sbjct 5744899 CATCCTCGAGCTGTTTACCCGCAAAGATAAGTCTCTTCTGTTCCGGAGGGATCCCTTCCT 5744840 Query 192440 TATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAA 192499 | ||||| || ||| ||| ||||| || | ||||| || |||||||| |||| Sbjct 5744839 TGTCTTGAATCTTAGCTTTAACATTGTCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAA 5744780 Query 192500 TGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 |||||||| || | || || | |||||||||||| Sbjct 5744779 TGGTTTTATTGGTAAGCGTCTTGACAAATATCTGCAT 5744743 >seq8 Length=40886855 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 |||||||| | |||||| || || | || | || | |||||| ||| || ||||| Sbjct 1189826 ATACCACCACGAAGACGCAAGACAAGGTGGAGTGTGGACTCTTTCTGGATGTTGTAATCC 1189885 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| || | || |||||||| ||||| | ||| || ||||| || Sbjct 1189886 GCAAGAGTCCTTCCATCTTCAAGCTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGA 1189945 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || || || ||| || |||||| |||| ||| || ||| Sbjct 1189946 GGAATTCCCTCTTTGTCCTGGATCTTAGCCTTGACATTATCAATAGTATCGGAGCTTTCA 1190005 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||| || || || || || || | ||| || ||||| Sbjct 1190006 ACCTCAAGAGTAATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 1190055 Score = 104 bits (114), Expect = 5e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| | |||||| | || ||||| | ||| | || || ||| || ||||| | Sbjct 1188620 CCACCACGAAGACGAAGAACCAAATGAAGAGTCGATTCCTTCTGGATGTTGTAATCCGCA 1188679 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | || | | |||| || | ||| ||||| || ||||| | |||||| ||||| || || Sbjct 1188680 AGAGTCCTTCCATCTTCAAGTTGCTTACCGGCGAAGATAAGTCTCTGCTGATCCGGAGGA 1188739 Query 192430 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCTACT 192489 || ||||| || || || || ||| || ||||| ||| | ||||| || || Sbjct 1188740 ATCCCTTCCTTGTCCTGAATCTTAGCCTTCACATTGTCTATTGTGTCTGAGCTCTCCACC 1188799 Query 192490 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||||||||||||||| | || || | ||||||||||| Sbjct 1188800 TCAAGGGTAATGGTTTTACCAGTGAGGGTCTTCACGAATATCTGCAT 1188846 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 ||||||||||| | || | || || || || || | ||| || |||||| || || Sbjct 1190054 ATACCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATATTGTAGTCG 1190113 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || | | |||| || | ||| |||||||| ||||| | ||| || ||||| || Sbjct 1190114 GCAAGAGTCCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGA 1190173 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || || || || || |||||| |||| || || || Sbjct 1190174 GGAATACCTTCCTTGTCCTGGATCTTTGCCTTAACATTATCGATAGTGTCAGAGCTCTCG 1190233 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || ||||| ||||| || ||||| | ||||| | ||||| ||||| Sbjct 1190234 ACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTCACGAATATTTGCAT 1190283 >seq7 Length=29178675 Score = 105 bits (116), Expect = 1e-17 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| | ||||| || ||||| | ||| | || || ||||| ||||| Sbjct 2571071 ATTCCACCTCTCAAACGTAGCACCAAATGCAGAGTTGATTCCTTCTGAATATTGTAATCC 2571012 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | ||||| |||| || | ||||||||||||||||| | ||||||| || || Sbjct 2571011 CCAAGGGTTCGACCATCCTCGAGCTGTTTACCAGCAAAGATGAGCCTCTGTTCGTCTGGA 2570952 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| |||||||| || || || || | || ||||| || Sbjct 2570951 GGGATCCCTTCCTTATCTTGGATCTTCGCCTTGACGTCGTCAATGCTGTCTGAGCTCTCA 2570892 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 ||||||| ||||| ||||||||||| | |||||| | |||||| |||||| Sbjct 2570891 ACTTCTAAGGTAATAGTTTTACCAGTGAGTGTTTTCACAAATATTTGCATT 2570841 Score = 93.3 bits (102), Expect = 8e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 192334 TGTAAAGTAGCCTCTTTAGAGATATTATAATCAGATAATGTTCGTTCATCATCCAATTGT 192393 |||| ||| | ||| || ||| || ||||| | | || || |||| || | |||| Sbjct 2570816 TGTAGAGTTGACTCCTTCTGGATGTTGTAATCCGCAAGAGTACGACCATCCTCGAGTTGT 2570757 Query 192394 TTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGTATTCCTTCTTTATCTTGTATTTTA 192453 |||||||| ||||| | ||||||| || || || || ||||| |||||||| || || Sbjct 2570756 TTACCAGCGAAGATGAGCCTCTGTTCGTCCGGAGGGATCCCTTCCTTATCTTGGATCTTC 2570697 Query 192454 TTTTTTACATTAGTTATAGAATCTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTT 192513 || || | || ||||| || ||||||| ||||| ||||||||||| Sbjct 2570696 GCCTTGACGTCGTCAATGCTGTCTGAGCTCTCAACTTCTAAGGTAATAGTTTTACCAGTG 2570637 Query 192514 AATGTTTTAATAAATATCTGCATT 192537 | |||||| | |||||| |||||| Sbjct 2570636 AGTGTTTTCACAAATATTTGCATT 2570613 >seq1 Length=25238555 Score = 105 bits (116), Expect = 1e-17 Identities = 108/141 (77%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 192310 CCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCAGAT 192369 ||||| ||||| | || || ||||| | || | |||||| || || || || | | Sbjct 21980172 CCACCCCTAAGCCTCAAAACCAAATGAAGCGTCGACTCTTTCTGAATGTTGTAGTCCGCT 21980231 Query 192370 AATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGTGGT 192429 | ||| || |||| || | |||||||||||||||||| |||||||||||||| |||||| Sbjct 21980232 AGTGTACGACCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTGATCTGGTGGT 21980291 Query 192430 ATTCCTTCTTTATCTTGTATT 192450 ||||| ||||| || ||| || Sbjct 21980292 ATTCCCTCTTTGTCCTGTTTT 21980312 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984129706325850