Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 131 5e-25 seq8 120 9e-22 seq1 113 1e-19 seq6 105 2e-17 seq7 93.3 1e-13 >seq5 Length=22804910 Score = 131 bits (144), Expect = 5e-25 Identities = 455/693 (66%), Gaps = 33/693 (5%) Strand=Plus/Minus Query 133249 TGATGGTATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGA 133308 ||| || || || || ||||| | | |||| || ||| ||| || ||| | |||| Sbjct 2412718 TGACGGAATCGTACTCGAAAACCTCGCTTCACGATTCATGTCAGATGTACAAGTCTCCGA 2412659 Query 133309 AGCCCGTGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTC 133368 ||| ||||| || || || | || || || || || ||||||||||| | ||||| Sbjct 2412658 AGCGCGTGCATTCTACGGATTCCAAATCGCTATTGAGAATATCCATTCAGAGATGTATTC 2412599 Query 133369 TACTCTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACA--AACTATTCAACGCC 133426 | ||| | || |||||||||||||||| | |||| | | | |||||| || Sbjct 2412598 TCTTCTTCTCGACACTTACATCAAAGATAAC--AAAGAAAGAGATCATCTATTCCGTGCA 2412541 Query 133427 AT--TAGCGAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCA-G 133483 || | ||| |||||||| ||| |||||| || |||||||| | |||||| | | Sbjct 2412540 ATCGAAACGA--TTCCTTGTGTTACCAAGAAAGCTTCATGGGCTATGACTTGGATCGATG 2412483 Query 133484 GA---CAAGCGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtt 133540 || ||| | || ||| ||| |||| || || ||| || || || || Sbjct 2412482 GATCTCAA-------ACATTCGCTGAACGTATCGTAGCGTTCGCTTGTGTTGAAGGTATA 2412430 Query 133541 tttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGA 133600 || ||| |||| | ||||| || ||||| |||||||| || ||||| | | ||||| Sbjct 2412429 TTCTTCTCTGGTTCCTTCTGTTCGATTTTCTGGCTTAAGAAACGTGGACTCATGCCTGGT 2412370 Query 133601 CTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGGCACTTCACACCGAATTTGC-CGT 133659 | ||| ||||||||| | || ||||| ||||| | | ||| || || || || Sbjct 2412369 TTAACTTTCTCTAACGAATTAATCTCAAGAGACGAAGGTTTACACTGTGATTTCGCTTGT 2412310 Query 133660 TTTACTT-CACTCTAAATTAGAGCG-ACCA--CTCAAAAAGAATAAGATTGAAG-AAATT 133714 || | || |||||| ||| || |||| || | || | |||| ||||| ||| Sbjct 2412309 TTGATTTACACTCT--GTTA---CGTACCAAGCTTAGTGAGGA-AAGAGTGAAGTCTATT 2412256 Query 133715 ATTAGAGAAGCGGTTGAAATTGAGGTTGAATTTATCAATAGTGCTCTGCCGTGCCGTTTA 133774 || | || |||||||| |||||| || ||| | | || || || || || Sbjct 2412255 GTTTGCGATGCGGTTGAGATTGAGAGAGAGTTTGTATGTGAAGCGCTTCCTTGTGCGTTG 2412196 Query 133775 ATTGGTATGAATGATGTGCTGATGCAGCGTTATATTGAATTTGTAGCTGACAGATTG-GC 133833 |||||||||||| || ||||| | |||||||| ||||| || || || ||| Sbjct 2412195 GTTGGTATGAATGGTGAATTGATGAGTCAGTATATTGAGTTTGTTGCGGATAGGTTGTTA 2412136 Query 133834 CGTTCAGTTAGGTGGGGATAAGATTTACGGTTCCGCCAATCCATTCGACTGGATGGAGAG 133893 || | || ||| || ||| | || ||| ||||| || || ||||||||| Sbjct 2412135 TGTGCGCTTGGGTATGG-TAAAGTGTATGGTGTGAGTAATCCTTTTGATTGGATGGAGTT 2412077 Query 133894 CATTAGCATTGAATCAAAGACTAATTTCTTCGA 133926 ||||| | || ||||||||||| || || Sbjct 2412076 GATTAGTTTACAAGGGAAGACTAATTTTTTTGA 2412044 >seq8 Length=40886855 Score = 120 bits (132), Expect = 9e-22 Identities = 278/412 (67%), Gaps = 18/412 (4%) Strand=Plus/Plus Query 288938 TAAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAAC 288997 |||| || ||||| |||||||| || || ||||| || || | ||| || ||| | Sbjct 10188314 TAAACCCGTCCATTTCGGTTAAAATCTGGTTTAGTGTCTGCTCACGTTCGTCGTTTCCTC 10188373 Query 288998 CTCTTGAATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAA 289057 ||| | || ||| || ||| | || | |||||||| ||||| || |||||||| | Sbjct 10188374 CTCCTAAA----CCGGTTC-CTC-TCATTCTCCCAACAGCGTCAATCTCATCAATGAATA 10188427 Query 289058 TCACACACGGAGAATT-----TTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGC 289112 | ||| || ||||| ||| || | ||| || || ||||| || | || || Sbjct 10188428 CTATACAAGGTGAATTACTCTTTGCCTTG---TTG--AACAAGTCTCTAACCCTAGAAGC 10188482 Query 289113 TCCAAGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATT 289172 ||| | ||||||| |||| |||| || || || |||||| | | || | ||| Sbjct 10188483 TCCTACACCAACAAACATCTCTATGAACTCTGATCCGGATAATGAGAAAAAAGGAACACC 10188542 Query 289173 TGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAA 289232 |||||| || |||| |||| | |||| || ||||| || ||||| || ||||| ||| Sbjct 10188543 TGCTTCTCCGGCTATTGCCTTGGCCAAGAGAGTCTTTCCGGTTCCTGGCGGTCCGGTTAA 10188602 Query 289233 TAGAACTCCCTTTGGTACTTTTGCCCCAGCAGACTTATA-TTTCTCAGGGCTCTTTAAAA 289291 | || || ||||| | ||| || || || || | | |||||| || | || || | Sbjct 10188603 CAAGACGCCTTTTGGGATTTTAGCTCCTA-AGGCTGAGAATTTCTCTGGAGTTTTCAAGA 10188661 Query 289292 ATTCTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 |||| || || || || | || | || || || || |||||||||||| Sbjct 10188662 ATTCAACGATCTCTTCGAAGTCTTGCTTGGCTTCGTCTACTCCTGCTACATC 10188713 >seq1 Length=25238555 Score = 113 bits (124), Expect = 1e-19 Identities = 310/468 (66%), Gaps = 14/468 (3%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG---CTTAAATCCA 288945 || || |||||||| ||||| || | ||| | || | |||| | || ||| ||| Sbjct 3040873 ATGTCTGCTCTGTTGGTTGCAGCAACTACGATAACAC---CGGTGTTACCCTCAAAACCA 3040929 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTG-A 289004 ||||| || | | |||||||| || || || ||||||||||| ||||| | Sbjct 3040930 TCCATCTCAGTCAGGAGCTGATTAAGAGTCTGCTCTCTTTCATCATT---ACCTCCACCA 3040986 Query 289005 ATCACCCGAATCGCTCCtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACA 289064 || ||| || ||| ||| | ||||||||||||| ||||| |||| |||| | || Sbjct 3040987 ATT--CCGGTTC-CTC-TTTGTCTACCAACAGCATCTATTTCATCAACAAAAACAATGCA 3041042 Query 289065 CGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAAC 289124 ||| | ||||| | || || || | || | || | || || |||| ||| || Sbjct 3041043 CGGCGCATTTTCCTTGGCTTTTTTGAAAAGATCGCGCACCCTTGAGGCACCAACACCGAC 3041102 Query 289125 ATACATTTCTACAAATTCAGAAGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGC 289184 | |||| || ||||| |||||| | || | | || ||| | |||| ||||| || || Sbjct 3041103 AAACATCTCAACAAACTCAGAACCCGAGATTGAAAAGAAGGGTACACCGGCTTCACCAGC 3041162 Query 289185 TACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTT 289244 | || | |||| | || ||||| || ||||| || || | | ||||| || || Sbjct 3041163 GATGGCTTTTGCCAACAAGGTTTTACCAGTACCAGGAGGACCAACAAGGAGAACACCTTT 3041222 Query 289245 TGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTC 289304 || | || || ||| | | | | ||||||| |||||||||| || || | ||| Sbjct 3041223 CGGGATCTTGGCACCAACCGCAGTGAACCTCTCAGGCTTCTTTAAAAACTCCACCACTTC 3041282 Query 289305 CTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | | || | || || ||||| ||| || |||||| ||||||| Sbjct 3041283 CATGAAATCTTGCTTGGCTTCATCGACTCCAGCAACATCATCAAAAGT 3041330 >seq6 Length=37079636 Score = 105 bits (116), Expect = 2e-17 Identities = 218/318 (69%), Gaps = 6/318 (2%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 ||||| ||||| || || ||||| || || | | ||| | |||||| || | Sbjct 20317537 ACCAATCGCATCGATCTCATCAATAAATATAATGCTCGGTGCCGCTTGTCTAGCCTCTTG 20317478 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 || || | ||| || | || | ||||| ||||||| |||| || | || || ||| | Sbjct 20317477 GAACAAATGTCTCACCCTCGACGGTCCAACACCAACAAACATCTCCATGAAATCTGAACC 20317418 Query 289149 GGATACTTGAATGAAT-GTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 ||||| | || ||| | ||| || ||| ||||| || | || | ||| |||| Sbjct 20317417 GGATA-TCGACAGAAACGGCACACCTGATTCCCCTGCGGTAGCTTTTGCTAAAAGAGTCT 20317359 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGC-CCCAGCAGAC 289266 | ||||||||||| || || |||| || | || ||||| | ||| || |||| | | Sbjct 20317358 TTCCTGTTCCAGGCGGACCAACTAAAAGTGCACCTTTTGGAATTTTAGCACCCA--AATC 20317301 Query 289267 TT-ATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || ||| |||| ||| |||| || || | ||||| |||| || ||| | ||| ||||| Sbjct 20317300 TTCATACTTCTTTGGGTTCTTCAAGAAATGTACAAATTCCATAATTTCTTGTTTAGCCTC 20317241 Query 289326 ATCACATCCTGCTACATC 289343 |||||||| || ||||| Sbjct 20317240 GTCACATCCAGCAACATC 20317223 Score = 104 bits (114), Expect = 7e-17 Identities = 314/474 (66%), Gaps = 26/474 (5%) Strand=Plus/Plus Query 288889 ATATCGGCTCTGTTTGTTGCTGCCAATACAACAATAGATTCGGTTTG--CTT-AAATCCA 288945 || || |||||||| ||||| || | ||||| || | |||| | ||| ||||||| Sbjct 13420294 ATGTCTGCTCTGTTAGTTGCAGCAACTACAATAACAC---CGGTGTTACCTTCAAATCCA 13420350 Query 288946 TCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAA 289005 ||||| |||| | |||||||| || ||||| ||||||||||| ||||| Sbjct 13420351 TCCATCTCAGTTAGTAGCTGATTAAGAGTCTGTTCTCTTTCATCATT---ACCTC----- 13420402 Query 289006 TCACCCGAATC--GCTCCttttt--ttACCAACAGCATCAATTTCGTCAATGAAAATCAC 289061 || || | || | |||| ||| ||||||||||||||||||| |||| || | | Sbjct 13420403 -CA-CCAATTCCGGTTCCTCTTTGCCTACCAACAGCATCAATTTCATCAACAAAGACAAT 13420460 Query 289062 ACACGGAGAATTTTGTCTCGC--AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGA 289119 || |||| |||| | || ||| ||| | || | || | || || |||| | Sbjct 13420461 GCAGGGAGCGTTTTCCTTGGCTTTCTTGAAAAGA--TCGCGGACTCTTGAGGCACCAACA 13420518 Query 289120 CCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTC 289178 || ||| |||| || ||||| |||||| | || | | || | ||| | ||| ||||| Sbjct 13420519 CCGACAAACATCTCAACAAACTCAGAACCAGAGA-TGGAGAAGAAAGGCACACCAGCTTC 13420577 Query 289179 GCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAAC 289238 || || | || | |||| ||| || || || || ||||| || || | ||||| Sbjct 13420578 ACCAGCAATAGCTTTTGCCAAAAGGGTTTTCCCCGTACCAGGAGGACCAATAAGGAGAAC 13420637 Query 289239 TCCCTTTGGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTAC 289298 || || || | || ||| | | | || |||| || |||| | ||| || || Sbjct 13420638 GCCTTTCGGGATCCGGGCACCAACCGCAGTGAATCTCTCGGGCTTCTTCAGAAACTCCAC 13420697 Query 289299 AATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 || |||| | || | ||||| |||||| ||| || |||||| |||| || Sbjct 13420698 AACTTCCATGAAATCTTGCTTTGCTTCATCAACTCCAGCAACATCATCAAATGT 13420751 Score = 84.2 bits (92), Expect = 6e-11 Identities = 267/409 (65%), Gaps = 14/409 (3%) Strand=Plus/Minus Query 288939 AAATCCATCCATACTTGTTAAAATTTGATTAAGTGTTTGTTCCCTTTCATCATTTGAACC 288998 ||| |||||||| || || | ||||||| || ||||| || ||||||||| ||| Sbjct 7695470 AAAACCATCCATCTCAGTCAAGAGCTGATTAATCGTCTGTTCTCTCTCATCATTTCCACC 7695411 Query 288999 TCTTGAATCACCCGAATCGCTCCtttttt--tACCAACAGCATCAATTTCGTCAATGAAA 289056 || | || |||||| | | |||||||||||||||| || ||||||||| Sbjct 7695410 TCCCATACCA--------GCTCCTCTCTGCCTACCAACAGCATCAATCTCATCAATGAAA 7695359 Query 289057 ATCACACACGGAGAATTTTGTCTCGCAATTGCAAATAATTCTCTTACACGGGATGCTCCA 289116 | | ||| || | || | | || | |||| || || || || | || || ||| Sbjct 7695358 ACAATACAAGGTGCTTTGGATTTGGCCTTCTCAAACAAATCCCTAACCCTAGACGCACCA 7695299 Query 289117 AGACCAACATACATTTCTACAAATTCAGAAGCGGATACTTGA-ATGAATGTTACATTTGC 289175 | |||||| | | || || || ||||| || | || || | ||| | || ||| Sbjct 7695298 ACACCAACGAAAAGCTCGACGAACTCAGACGCAG-CACAAGAGAAGAAAGGCACGCCTGC 7695240 Query 289176 TTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAG 289235 || || || || || || |||| ||| ||||| || || || || || || | || Sbjct 7695239 CTCTCCGGCCACAGCTCTGGCCAAAAGCGTCTTGCCCGTCCCCGGAGGACCAAC-AAGCA 7695181 Query 289236 AACTCCCTTT-GGTACTTTTGCCCCAGCAGACTTATATTTCTCAGGGCTCTTTAAAAATT 289294 ||| ||||| || | || || || || | || || ||||| |||| || || | Sbjct 7695180 AACAGCCTTTAGGAATCTTAGCACCTAAAGCTGTGTACTTATCAGGATTCTTCAAGAAAT 7695121 Query 289295 CTACAATTTCCTCAAGTTCATATTTTGCCTCATCACATCCTGCTACATC 289343 | |||| ||||| | ||| || || | |||| |||||| ||||| Sbjct 7695120 CAACAACTTCCTGTAACTCAAGCTTAGCTTGATCAGCTCCTGCAACATC 7695072 >seq7 Length=29178675 Score = 93.3 bits (102), Expect = 1e-13 Identities = 169/247 (68%), Gaps = 3/247 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| ||||||||||| || ||||| |||||||||||||| | ||| || || | | Sbjct 28704362 TACCTTTCCTCTTGCCTCCTCCTTGATCAACATACCGAGCAGTATCATTAAACACCCTCA 28704303 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||| |||| ||||||||| || ||||| || || ||||||| |||| | | Sbjct 28704302 GCATCGGAACAATACCATTAGATTCTCCATTCGTGCCACGAATATAACTTCCAGTAGCAC 28704243 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 | | ||||||||| | ||||||||||| | ||||| || || || || | Sbjct 28704242 GGATATTATGAATCGAAACACCAATACCACCAGCTGATTTACTTATAGCTGCACACTCTT 28704183 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAAC 156285 | | |||| | || || |||||| |||||| | ||| | | ||| |||| || Sbjct 28704182 TCAACGTATCATATATTCCCTCAATACTATCATCCTTCATACAAACAAGAAAGCAGCTAC 28704123 Query 156286 TTAATTG 156292 |||| || Sbjct 28704122 TTAACTG 28704116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471293903840827