Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq3 410 1e-109 seq20831 405 6e-108 seq7 176 5e-39 seq2 143 3e-29 >seq3 Length=27950219 Score = 410 bits (454), Expect = 1e-109 Identities = 684/987 (69%), Gaps = 1/987 (0%) Strand=Plus/Minus Query 159328 GCTTTGTTTTTGTGGGGTGGTCTGGACTACTACTTCTTCCCACTGCTTATCTGGCCATTG 159387 ||||||||||||| || |||||||| ||| | || |||| ||| ||| | || | | Sbjct 12152868 GCTTTGTTTTTGTAGGTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAG 12152809 Query 159388 GCGGTTGGCTTACTGGCACAGCTTTTGTTACGAGTTGGTACACCCACGGTCTTGCTAGTT 159447 | | |||| | || || || | ||||| || ||||| || || || | ||||||| Sbjct 12152808 GGGATTGGTTCACAGGTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTT 12152749 Query 159448 CCTATCTTGAGGGTGCTAACTTTCTCACAGCAGCTGTCTCGACGCCTGCTGACGCTATGG 159507 ||||| | || ||| || ||| || || || | ||||| |||||| | | | | Sbjct 12152748 CCTATTTAGAAGGTTGCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAG 12152689 Query 159508 GTCATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGAATTTCCAGCGGTGGTGCC 159567 |||||| | | |||| ||||||| ||| | || | |||| || ||||| | Sbjct 12152688 CACATTCTTTGTTGTTACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTC 12152629 Query 159568 AACTTGGGGGATTATGGAATTTTGTGGCACTCCACGGTGCCTTCGCCCTAATTGGTTTCA 159627 || | || || | | | |||||| || ||| |||| || || || |||| |||| | Sbjct 12152628 AATTAGGCGGTCTCTAGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTA 12152569 Query 159628 TGCTCCGTCAGTTTGAACTGGCACGTCTCATTGGTATCCGTCCTTACAATGCTATTGCGT 159687 || | ||||| |||||||| || || | || | || ||||| ||||| || || | Sbjct 12152568 TGTTACGTCAATTTGAACTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCGCAT 12152509 Query 159688 TCTCTGGTCCTATTGCTGTTTTTGTCAGCGTCTTCCTCATCTACCCATTGGGTCAGTCCA 159747 |||||||||| || ||||||||||| ||| |||| || || ||| ||||||| || Sbjct 12152508 TCTCTGGTCCAATCGCTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTG 12152449 Query 159748 GTTGGTTTTTCGCTCCGTCCTTTGGGGTGGCAGCAATCTTTAGATTCCTGTTGTTCCTTC 159807 ||||||| || || || ||||| || || || || ||| ||||| | | || | | Sbjct 12152448 GTTGGTTCTTTGCGCCTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTT-TCC 12152390 Query 159808 AAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTGGTATACTAG 159867 |||| ||||| || |||| || || || || |||||||||||||| | ||| |||| | Sbjct 12152389 AAGGGTTTCATAATTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCG 12152330 Query 159868 GTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGTATGAAGATG 159927 | | || || || | || || ||||| | ||||||||| || || | | |||||||| Sbjct 12152329 GCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGATG 12152270 Query 159928 GAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGACTTACTCTA 159987 | || |||||||| || || ||| | ||||||||| || || ||||| || | Sbjct 12152269 GTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAA 12152210 Query 159988 TGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGGT 160047 ||||||| || |||||||| ||||| | |||| || |||| ||||| || || || | Sbjct 12152209 TGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTT 12152150 Query 160048 GGCTTCATTTCTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCA 160107 || | ||||||| ||||| ||||| | || | ||| | |||| || |||| Sbjct 12152149 GGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAG 12152090 Query 160108 TTATTGGCCTTGCTCTTAATCTTCGTGCTTACGATTTCGTAAGTCAAGAGATCAGAGCAG 160167 | | ||||| ||| | || || |||| || || ||||| || || | | | |||| Sbjct 12152089 TAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAG 12152030 Query 160168 CAGAAGATCCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAACGAAGGACTAC 160227 | |||||| | |||||||||| ||| | || ||||| || || || |||||||| | | Sbjct 12152029 CGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGAAGGTATTC 12151970 Query 160228 GTGCATGGTTGGCACCTGCTGATCAACCCCATGAAAACTTTATCTTCCCAGAAGAAGTAT 160287 |||| ||| |||| || ||| | || ||||||||| |||| |||| || || || Sbjct 12151969 GTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGAGGAGGTTC 12151910 Query 160288 TGCCTAGAGGCAACGCCCTTTAATAAA 160314 | || | || ||||| ||||||| || Sbjct 12151909 TACCACGTGGAAACGCTCTTTAATGAA 12151883 >seq20831 Length=3535 Score = 405 bits (448), Expect = 6e-108 Identities = 536/741 (72%), Gaps = 2/741 (0%) Strand=Plus/Minus Query 157622 GGTTGGTTCGGCGTACTGATGATTCCAACTCTGTTGGCAGCAACCATCTGTTTCATCGTC 157681 || ||||| || || ||||||| || || | ||| | ||||| | ||| || || Sbjct 742 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCCGTTTTTATTATC 683 Query 157682 GCCTTCGTCGCTGCTCCCCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCA 157741 || ||| | |||||||| || || || || || || || |||||||| || |||| || Sbjct 682 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 623 Query 157742 CTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGT 157801 || | || || ||||| || || || ||||| || | || |||| || |||||| Sbjct 622 CTTCTTTACGGAAACAATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGT 563 Query 157802 CTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGT 157861 | || || || || ||||||||||| ||||| ||||||| ||||| || ||||| ||| Sbjct 562 TTGCATTTTTACCCGATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 503 Query 157862 CCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAG 157921 |||| |||| | || | ||||| | ||||| | | || ||||| |||||| Sbjct 502 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAG 443 Query 157922 TGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCA 157981 ||||||||| | |||| | |||||||| || ||||| ||| |||||||| ||||| Sbjct 442 TGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCT 383 Query 157982 GTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGAT 158041 || || || ||| ||||||| ||| | | || || | |||||||| ||| || ||| Sbjct 382 GTTGCAGCTGCAACTGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGAT 323 Query 158042 GCTATGCCTCTTGGTATCTCTGGTACTTTTAACTACATGCTTGTATTCCAAGCAGAACAC 158101 | ||||||||| || |||||||||||||| |||| ||| |||||||||| || || ||| Sbjct 322 GGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCAC 263 Query 158102 AACATCCTTATGCACCCGTTCCATATGCTCGGTGTTGCTGGGGTATTCGGTGGATCTCTT 158161 ||||| ||||||||||| || || ||| | ||||| ||||| |||||||| || || | Sbjct 262 AACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTA 203 Query 158162 TTCTCTGCTATGCACGGAAGTCTCGTTACTTCCTCACTCGTTC-GTGAAACGACTGAAAC 158220 || ||||||||| || | || |||| || | | || | ||||| || |||| Sbjct 202 TTTAGTGCTATGCATGGTTCCTTGGTAACTT-CTAGTTTGATCAGGGAAACCACAGAAAA 144 Query 158221 AGAGTCACAGAACTACGGTTACAAGTTCGGTCAAGAGGAAGAGACCTATAACATCGTCGC 158280 || || || | ||||||| ||||| ||||| ||||| || || ||||| || || Sbjct 143 TGAATCTGCTAATGAAGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGC 84 Query 158281 AGCACATGGCTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAACTCCCGTTC 158340 || ||||| || || || || |||||||||||||| ||| |||||||| || ||||| Sbjct 83 TGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTC 24 Query 158341 CTTGCACTTCTTCCTTGCTGC 158361 || || |||||| | || || Sbjct 23 TTTACATTTCTTCTTAGCGGC 3 >seq7 Length=29178675 Score = 176 bits (194), Expect = 5e-39 Identities = 206/277 (74%), Gaps = 1/277 (0%) Strand=Plus/Minus Query 159800 GTTCCTTC-AAGGATTTCACAACTGGACGTTAAATCCCTTCCATATGATGGGAGTTGCTG 159858 |||| ||| |||| ||||| || ||||| | || || || |||||||||||||| || | Sbjct 25949514 GTTCTTTCCAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCG 25949455 Query 159859 GTATACTAGGTGGAGCACTACTCAGTGCCATCCATGGCGTTACTGTAGAGAACACACTGT 159918 || |||| || | || || || | || || ||||| | ||||||||| || || | | Sbjct 25949454 GTGTACTGGGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTAT 25949395 Query 159919 ATGAAGATGGAGAACAAGCAAATACCTTTAAGGCGTTTGATTCAACTCAAGAGGAGGAGA 159978 ||||||||| || |||||||| || || ||| | ||||||||| || || | Sbjct 25949394 TTGAAGATGGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAA 25949335 Query 159979 CTTACTCTATGGTCACTGCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTA 160038 |||| || |||||||| || |||||||| ||||| || ||||| || |||| ||||| | Sbjct 25949334 CTTATTCAATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCA 25949275 Query 160039 ACAAGCGGTGGCTTCATTTCTTCATGTTGTTTGTGCC 160075 | || || ||| | |||||||| ||||| ||||| || Sbjct 25949274 ATAAACGTTGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq2 Length=28351830 Score = 143 bits (158), Expect = 3e-29 Identities = 156/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 158729 GTCCAATGTGAAGAGGATCAATACATTCTAGACGCAGCAGAAGAAGCAGGAGTTGATATT 158788 ||| |||| || || || ||| | || |||||||| |||||||||||| | ||| | Sbjct 3660681 GTCGAATGCGACGACGACGTTTACGTCCTCGACGCAGCTGAAGAAGCAGGAATCGATTTG 3660622 Query 158789 AATTACTCTTGTCGTGCTGGTGCTTGCTCTTCATGTGCAGGTAAAATTGTATCTGGAACT 158848 ||||||||| ||||||||| | || || |||||||||||| || |||||| || Sbjct 3660621 CCTTACTCTTGCCGTGCTGGTTCATGTTCAAGCTGTGCAGGTAAAGTTAAGTCTGGATCT 3660562 Query 158849 GTTGATCAGAGTGATCAGTCGTTCTTAGACGATGATCAGATTGCAGCAGGATTTGTTCTT 158908 |||||||| ||| ||| ||| | || ||||| |||||||| | |||||||||||| Sbjct 3660561 GTTGATCAATCTGACCAGAGTTTCCTCGATGATGAACAGATTGCTGAAGGATTTGTTCTC 3660502 Query 158909 ACGTGTGTAGCATATCCAACATCTGAT 158935 || |||| || ||||| || |||||| Sbjct 3660501 ACTTGTGCTGCTTATCCTACCTCTGAT 3660475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548184038681720