Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq3 506 2e-138 seq20831 486 2e-132 seq7 201 1e-46 seq6 116 4e-21 seq1 89.7 6e-13 >seq3 Length=27950219 Score = 506 bits (560), Expect = 2e-138 Identities = 723/1014 (71%), Gaps = 3/1014 (0%) Strand=Plus/Minus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGAGAGACCGTTTCGTTTTTGTTGGTTGGTCTGGA 152418 |||||| | ||||||||||| | ||| || | || |||||||| ||||||||||| Sbjct 12152902 TTTGATATTATGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAGGTTGGTCTGGT 12152843 Query 152419 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 152478 || | || ||||| ||| ||| | ||| | || | |||| | || || | || || Sbjct 12152842 CTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAGGTGCAACCTTT 12152783 Query 152479 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTT 152538 | || ||||||||||| || ||||| ||||||||| | || || || ||| Sbjct 12152782 GTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTTGCAATTTTTAA 12152723 Query 152539 ACTGCGGCAGTTTCTACTCCAGCAGATGCTATGGGTCATTCTCTTCTGCTTCTCTGGGGT 152598 || || || |||| ||||| || || | | | |||||| | || | || |||||| Sbjct 12152722 ACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGTTACTGTGGGGT 12152663 Query 152599 CCTGAGGCTCAAGGGGATTTCGTCAGATGGATTCAGCTCGGAGGACTCTGGGCTTTTGTG 152658 | ||| || ||| | ||||| | ||| ||| | || || |||| ||||||||| Sbjct 12152662 CTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCTAGGCTTTTGTT 12152603 Query 152659 GCGCTCCACGGGGCTTTCGCTCTAATCGGTTTCATGCTTCGCCAGTTTGAACTGGCACG- 152717 || ||| |||| ||||| || |||| |||| ||| | || || |||||||| || || Sbjct 12152602 GCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTGAACTTGCTCGA 12152543 Query 152718 TCTCATCGGTATCCGTCCCTACAATGCTATTGCGTTCTCTGGTCCTATCGCTGTTTTTGT 152777 || || | | || || || ||||| || || ||||||||||| |||||||||||||| Sbjct 12152542 TCCGTTCAAT-TGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCGCTGTTTTTGT 12152484 Query 152778 TAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAGTTGGTTTTTCGCTCCATCTTTCGG 152837 | ||| | || || || || ||||||||||| ||||||| || || || ||| || Sbjct 12152483 TTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGCCTAGTTTTGG 12152424 Query 152838 GGTCGCAGCAATCTTCCGATTCCTTCTCTTCCTTCAAGGATTCCACAACTGGACATTGAA 152897 || || || || || |||||| | || || | ||||| || || || |||| |||||| Sbjct 12152423 TGTAGCGGCTATATTTCGATTCATCCTTTTT-TCCAAGGGTTTCATAATTGGATATTGAA 12152365 Query 152898 TCCGTTTCATATGATGGGTGTTGCAGGTATTTTGGGAGGGGCCTTGCTTTCTGCCATTCA 152957 || |||||||||||||| || | ||| | | || | || |||| | || ||||| Sbjct 12152364 CCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCTATGCGCTATTCA 12152305 Query 152958 TGGTGTTACAGTAGAGAATACTTTGTATCAAGATGGTGAACAAGCAAACACTTTCAAAGC 153017 ||||| ||| ||||| |||||||| | | |||||||||| ||||| || ||| || Sbjct 12152304 TGGTGCTACTGTAGAAAATACTTTATTTGAAGATGGTGATGGTGCAAATACATTCCGTGC 12152245 Query 153018 TTTCGACAGCACTCAAGAAGAAGAGACCTATTCGATGGTTACTGCTAACCGTTTCTGGTC 153077 ||| || ||||||| ||||| || ||||| ||||| || |||||||| || ||||| Sbjct 12152244 TTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTC 12152185 Query 153078 CCAGATATTTGGAATTGCTTTTAGCAATAAACGCTGGCTTCATTTCTTTATGCTGTTTGT 153137 | | ||||| |||||||| ||||||||| ||| | ||||||| |||| | ||||| Sbjct 12152184 ATAATTCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTATATGTTATTTGT 12152125 Query 153138 ACCTGTTATGGGTCTTTGGACCTCTTCTATTGGAATCATTGGTCTTGCTCTCAATCTTCG 153197 | | || | ||| | |||| | || ||||| | | || || ||| | || || | Sbjct 12152124 ATCGGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGCCTAGCTTTGAACCTATG 12152065 Query 153198 TGCTTACGATTTTGTATCTCAAGAAATCAGGGCGTCAGAAGATCCTGAATTTGAGACGTT 153257 ||| || || || || || || |||| | | || | |||||| | |||||||||| || Sbjct 12152064 TGCCTATGACTTCGTTTCCCAGGAAACCCGTGCAGCGGAAGATTCGAAATTTGAGACTTT 12152005 Query 153258 CTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGCACCTGTTGACCA 153317 | |||| || ||||| ||||| ||||||||| ||||||||||| |||| || | || | Sbjct 12152004 CAATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTCTAGATAA 12151945 Query 153318 ACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAACGCTCT 153371 |||||||| ||| | | |||| ||| ||||| | ||||| || |||||||| Sbjct 12151944 GCCTCATGAAAACCTTATATTCCTTGAGGAGGTTCTACCACGTGGAAACGCTCT 12151891 Score = 111 bits (122), Expect = 2e-19 Identities = 100/126 (79%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 153246 ATTTGAGACGTTCTATACGAAGAATATCCTTTTGAACGAAGGTCTTCGTGCTTGGTTGGC 153305 || |||||| |||||||| || ||||| ||||| ||||||||| ||||||||||| |||| Sbjct 27467485 ATATGAGACTTTCTATACTAAAAATATTCTTTTAAACGAAGGTATTCGTGCTTGGATGGC 27467544 Query 153306 ACCTGTTGACCAACCTCATGAGAACTTCGTGTTCCCTGAAGAGGTATTGCCACGAGGCAA 153365 || || || |||||||| ||| | | |||||||| ||||| | ||||| || || Sbjct 27467545 GGCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAA 27467604 Query 153366 CGCTCT 153371 |||||| Sbjct 27467605 CGCTCT 27467610 >seq20831 Length=3535 Score = 486 bits (538), Expect = 2e-132 Identities = 582/786 (74%), Gaps = 6/786 (1%) Strand=Plus/Minus Query 150838 CTTTTGTGACTGGGTTACCTCTACTAACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCT 150897 ||| ||| ||||| | ||| ||| | || ||||| || | || ||||| ||||| | Sbjct 785 CTTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTT 726 Query 150898 GATGATTCCAACTCTGTTGGCAGCAAC--CATTTGCTTCATCGTGGCATTCATCGCTGCT 150955 |||||| || || | ||| | ||||| | || || || | |||||||| |||||| Sbjct 725 GATGATCCCTACCTTATTGACCGCAACTTCCGTT--TTTATTATCGCATTCATTGCTGCT 668 Query 150956 CCCCCTGTGGACATCGATGGCATCCGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAAC 151015 || || || || || ||||| || |||||||| ||| |||| ||||| | ||||| ||| Sbjct 667 CCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAAC 608 Query 151016 AACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCC 151075 || || || || ||||| || ||||| ||||| ||||| ||| |||| || || || Sbjct 607 AATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCG 548 Query 151076 ATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTT 151135 ||||||||||| || || | ||||||||||| |||||||| ||||||| |||| || Sbjct 547 ATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATT 488 Query 151136 GTCTTCCACTTCCTGATTGGTATCTATGCTTACATGGGTCGTGAGTGGGAACTGTCTTAC 151195 || | ||||| | ||||| | | ||| |||||||||||||||||||| || | Sbjct 487 GTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTC 428 Query 151196 CGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATACTCTGCTCCAGTTGCTGCTGCGAG 151254 || ||||||||||||| ||||| ||| |||||||| || ||||| ||||| ||||| | Sbjct 427 CGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAAC 369 Query 151255 TGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCAATGCCCCTGGG 151314 ||| || ||| | | || || | |||||||| ||| ||||||| ||||| || || Sbjct 368 TGCTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGG 309 Query 151315 TATTTCTGGCACATTCAACTACATGCTTGTCTTCCAAGCAGAGCACAACATTCTGATGCA 151374 || ||||| || ||||||| ||| |||| ||||| || |||||||||||||| ||||| Sbjct 308 AATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCA 249 Query 151375 CCCCTTCCATATGCTTGGTGTGGCTGGTGTCTTCGGTGGATCGCTCTTCTCGGCAATGCA 151434 ||| || || ||| | ||||| |||||||| ||||| || || | || || ||||| Sbjct 248 CCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCA 189 Query 151435 CGGTTCTCTGGTTACTTCTTCGCTGGTTCGTGAGACCACCGAAAACGAGTCCCAGAACTA 151494 ||||| |||| |||||| || | | || ||||| ||||| || || || | Sbjct 188 TGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 129 Query 151495 TGGTTACAAGTTCGGTCAAGAAGAAGAGACCTACAACATCGTTGCCGCACACGGTTACTT 151554 ||||||| ||||| ||||||||||| || |||||||| || || || || ||||| || Sbjct 128 AGGTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTT 69 Query 151555 TGGTCGTCTCATCTTCCAATACGCTTCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCT 151614 ||| || | ||||||||||| ||| ||||||||||| ||||| | || |||||| | Sbjct 68 TGGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTT 9 Query 151615 CGCAGC 151620 || || Sbjct 8 AGCGGC 3 >seq7 Length=29178675 Score = 201 bits (222), Expect = 1e-46 Identities = 206/269 (77%), Gaps = 0/269 (0%) Strand=Plus/Minus Query 152872 CAAGGATTCCACAACTGGACATTGAATCCGTTTCATATGATGGGTGTTGCAGGTATTTTG 152931 ||||| || || || ||||||| ||| || |||||||||||||| || || ||| | || Sbjct 25949506 CAAGGGTTTCATAATTGGACATAGAACCCATTTCATATGATGGGAGTCGCCGGTGTACTG 25949447 Query 152932 GGAGGGGCCTTGCTTTCTGCCATTCATGGTGTTACAGTAGAGAATACTTTGTATCAAGAT 152991 || | || |||| | || |||||||||| ||| ||||| |||||||| | | ||||| Sbjct 25949446 GGCGCCGCTCTGCTATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGAT 25949387 Query 152992 GGTGAACAAGCAAACACTTTCAAAGCTTTCGACAGCACTCAAGAAGAAGAGACCTATTCG 153051 ||||| ||||| || ||| ||||| || ||||||| ||||| || ||||| Sbjct 25949386 GGTGATGGTGCAAATACATTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCA 25949327 Query 153052 ATGGTTACTGCTAACCGTTTCTGGTCCCAGATATTTGGAATTGCTTTTAGCAATAAACGC 153111 ||||| || |||||||| || ||||| || || ||||| |||||||| ||||||||| Sbjct 25949326 ATGGTCACCGCTAACCGCTTTTGGTCACAAATCTTTGGGGTTGCTTTTTCCAATAAACGT 25949267 Query 153112 TGGCTTCATTTCTTTATGCTGTTTGTACC 153140 ||| | |||||||||||| | |||||||| Sbjct 25949266 TGGTTACATTTCTTTATGTTATTTGTACC 25949238 >seq6 Length=37079636 Score = 116 bits (128), Expect = 4e-21 Identities = 165/228 (72%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 150863 AACAACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCA 150922 || || ||||| || | || ||||| ||||| |||||||||| || | ||| | ||| Sbjct 27053898 AAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACCTTATTGACCGCA 27053839 Query 150923 AC---CATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATC 150979 || | ||| || || | |||||||| ||| |||| || || || || ||||| || Sbjct 27053838 ACTTCCGTTT--TTAATA-TCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATT 27053782 Query 150980 CGTGAACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTT 151039 |||||| | ||| |||| ||||| | || || ||||| || || || ||||| || || Sbjct 27053781 CGTGAATCTGTTTCTGGATCTCTTCTTTATGGAAACAATATTATTTCAGGTGCCATTATT 27053722 Query 151040 CCTTCTTCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCA 151087 ||| |||| ||||| | | |||| || || || |||||||||||| Sbjct 27053721 CCTACTTCAGCAGCTATTGTT-TGCATTTTTACCCGATCTGGGAAGCA 27053675 Score = 102 bits (112), Expect = 9e-17 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 151993 AAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTACTCTT 152052 |||||||||| |||||||||||||| ||||| || ||||||||| || ||||||| Sbjct 23704722 AAGATGACCAATACATCTTGGATGCAGCTGAAGAGGCAGGAGTTGACTTGCCTTACTCTT 23704781 Query 152053 GTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGATCAG 152111 | | |||||||| |||||| |||| ||||||||||| | || || | ||||| ||| Sbjct 23704782 GCAGAGCTGGTGCGTGTTCCACTTGCGCTGGTAAGATCGAGAAAGGCAACGTTGACCAG 23704840 >seq1 Length=25238555 Score = 89.7 bits (98), Expect = 6e-13 Identities = 144/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 151989 TGTGAAGATGACCAGTACATCTTGGATGCTGCTGAGGAACAAGGAGTTGATATGAACTAC 152048 |||||||| ||| ||| || | || || ||||| ||| ||| | || || ||| Sbjct 6597791 TGTGAAGAAGACGTCTACGTCCTCGACGCAGCTGAAGAAGCCGGAATCGACTTGCCTTAC 6597850 Query 152049 TCTTGTCGTGCTGGTGCATGTTCCTCTTGTGCTGGTAAGATTGTGAGTGGTACAGTTGAT 152108 || || ||||||||| | || || || || ||||| | || ||| | ||||| Sbjct 6597851 TCATGCCGTGCTGGTTCTTGCTCTAGCTGCGCCGGTAAAGTCGTCTCTGGCTCCGTTGAC 6597910 Query 152109 CAGAGTGACCAATCATTCTTGGATGATGACCAGATTGAATCAGGATTCGTGCTGACCTGT 152168 ||| |||||| |||||||| || ||||| || || ||| | || | |||||| Sbjct 6597911 CAGTCCGACCAAAGCTTCTTGGACGACGACCAAATGAAAGAAGGCTATGTCTTAACCTGT 6597970 Query 152169 GTTGCATATCCAACTTCTGATGTCACC 152195 || || || |||||||||||||||||| Sbjct 6597971 GTCGCTTACCCAACTTCTGATGTCACC 6597997 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549431605454120