Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq20831 407 2e-108 seq3 242 4e-59 seq6 98.7 1e-15 >seq20831 Length=3535 Score = 407 bits (450), Expect = 2e-108 Identities = 559/776 (72%), Gaps = 4/776 (1%) Strand=Plus/Minus Query 72235 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 72294 || ||| | ||| |||| |||||| ||||| | ||| |||| ||||||||||| || Sbjct 784 TTCTGTAACTGGATAACCAGCACTGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTG 725 Query 72295 ATGATCCCATGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCC 72353 |||||||| | ||| | || || || | ||| ||| | |||||||| |||||||| Sbjct 724 ATGATCCC-TACCTTATTGACCGCAACTTCCGTTTTTATTATCGCATTCATTGCTGCTCC 666 Query 72354 TCCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCT-TTCTTATATGGTAACA 72412 |||||| ||||| || || || | ||||| ||| | || ||| ||||| || || |||| Sbjct 665 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTT-TACGGAAACA 607 Query 72413 ACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCA 72472 | || || || ||||| | |||| |||| || || || || || || || || | Sbjct 606 ATATTATTTCAGGTGCCATTATTCCTACTTCTGCAGCTATTGGTTTGCATTTTTACCCGA 547 Query 72473 TCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTA 72532 |||||||||| || | | || || ||| | || ||||| |||||||| | || || Sbjct 546 TCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTG 487 Query 72533 TTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACA 72592 || | ||||| | |||| | || || |||||| | |||||||||| | | Sbjct 486 TTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 427 Query 72593 GACTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTG 72652 | || || ||| | |||||||| ||| ||||| ||||| ||||| | || ||| || Sbjct 426 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCAACTG 367 Query 72653 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTA 72712 | || ||| | | || ||| | ||||| || || |||||||||||||| ||||| | Sbjct 366 CTGTTTTCTTGATTTACCCAATTGGTCAAGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 307 Query 72713 TCTCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACC 72772 |||| ||||| |||||||| ||| | || ||||| || || |||||||| || ||||||| Sbjct 306 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 247 Query 72773 CCTTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGTAGTCTCTTCAGTGCAATGCACG 72832 | || || ||| ||||||||| ||| | ||||| || | || ||||| ||||| | Sbjct 246 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCTTATTTAGTGCTATGCATG 187 Query 72833 GTTCACTTGTTACTTCATCTCTAATCAGAGAGACAACAGAGAACGAGAGTCAAAACTACG 72892 |||| | || ||||| | | ||||| || || ||||| || || | || | | Sbjct 186 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 127 Query 72893 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 72952 | || | |||||||||||||||||||| || |||||||| ||||||||||| || || | Sbjct 126 GTTACAGATTCGGACAAGAAGAAGAAACTTACAACATTGTAGCTGCTCATGGTTATTTTG 67 Query 72953 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTC 73008 | |||| |||||||| ||||| |||||||| |||||||| ||||| |||||| Sbjct 66 GCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTC 11 >seq3 Length=27950219 Score = 242 bits (268), Expect = 4e-59 Identities = 685/1051 (65%), Gaps = 26/1051 (2%) Strand=Plus/Minus Query 73353 AAAGAGAATGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCG 73412 ||| ||| | ||||| || | ||||| |||||| ||| | | || || || | | Sbjct 12152913 AAAAAGATTTATTTGATATTATGGATGACTGGTTACGGAGGTACTGCTTTGTTTTTGTAG 12152854 Query 73413 GATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAG 73472 | ||||||||||| || || || |||||||| || | || | || | ||||||| || Sbjct 12152853 GTTGGTCTGGTCTATTGCTCTTTCCTTGTGCCTATTTCGCTTTAGGGGATTGGTTCACAG 12152794 Query 73473 GAACTACTTTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAG 73532 | | || || || || |||||||| || ||||| | || || ||| | || || Sbjct 12152793 GTGCAACCTTTGTAACTTCATGGTATACTCATGGATTGGCTAGTTCCTATTTAGAAGGTT 12152734 Query 73533 CAAATTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGT 73592 ||||||| ||| || || | || || |||| | || | | | ||| | | |||| Sbjct 12152733 GCAATTTTTAAACCGCTGCCATTTCGACTCCTGCTAATAGTTTAGCACATTCTTTGTTGT 12152674 Query 73593 TCCTTTGGGGACCAGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTAT 73652 | || ||||| | || |||||| ||||| || || |||| ||||||||| || || | Sbjct 12152673 TACTGTGGGGTCTTGAAGCACAAAGAGATTTTACTCGTTGGTGTCAATTAGGCGGTCTCT 12152614 Query 73653 GGAACTTTGTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTG 73712 | ||||| || | | || | |||| | | ||| |||| ||| | | || |||| Sbjct 12152613 AGGCTTTTGTTGCTCTCTACGGCGCTTTTGCATTAATATGTTTTATGTTACGTCAATTTG 12152554 Query 73713 AGATTGCAGGACTTGTTGGGATACGTCCTTACAACGCATTAGCTTTTTCAGCAGTTATCG 73772 | |||| || ||| | || ||||| || ||| | || || || | |||| Sbjct 12152553 AACTTGCTCGATCCGTTCAATTGCGCCCTTATAATGCAATCGCATTCTCTGGTCCAATCG 12152494 Query 73773 CAGTATTCACGAGCATCTTTCTAATATATCCTTTAGGACAGCATAGTTGGTTCTTCGCAC 73832 | || || || | ||||| ||||| | || || | |||||||||| || | Sbjct 12152493 CTGTTTTTGTTTTTGTCCTCCTAATTTATCCACTGGGTCAATCTGGTTGGTTCTTTGCGC 12152434 Query 73833 CTTCATTCGGTGTCGCAGCAATCTTTCG--TTATATTTTATTCATACAGGGTTTCCACAA 73890 || || ||||| || || || ||||| | || ||| ||| || || || || || Sbjct 12152433 CTAGTTTTGGTGTAGCGGCTATATTTCGATTCATCCTTTTTTC---CAAGGGTTTCATAA 12152377 Query 73891 TATAACTCTTAATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACT 73950 | | | || ||||||||||||||||| || | ||| |||| || | || | || Sbjct 12152376 TTGGATATTGAACCCATTTCATATGATGGGAGTCGTCGGTGTACTCGGCGCCGCTCTGCT 12152317 Query 73951 ATGTGCCATACATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACAC 74010 ||| || || |||||||| || ||| | || || || | |||||| Sbjct 12152316 ATGCGCTATTCATGGTGCTACTGTAGAAAATACTTTATTTGAAGA--------------- 12152272 Query 74011 TGAAGGTAAGATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAGAC 74070 || | | | | ||| |||| ||| | || || | || || || | ||||| || Sbjct 12152271 TG--GTGATGGTGCAA-ATACA---TTCCGTGCTTTTAACCCAACTCAAGCTGAAGAAAC 12152218 Query 74071 TTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAA 74130 |||| ||| | || |||||| | || |||||| | | ||||| | || ||||| || Sbjct 12152217 TTATTCAATGGTCACCGCTAACCGCTTTTGGTCATAATTCTTTGGGGTTGCTTTTTCCAA 12152158 Query 74131 CAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATC 74190 ||| | | ||||| ||| |||||| || ||| | || | ||| | |||| | Sbjct 12152157 TAAACGTTGGTTACATTTCTATATGTTATTTGTATCGGTAACTGGTTTATGGATGAGTGC 12152098 Query 74191 TATAGGTATCGTAGGTCTAGCACTTAACCTTAGAGCATACGACTTTGTATCTCAAGAGAT 74250 | | || | || || ||||| | ||||| | || || ||||| || || || || | Sbjct 12152097 TCTTGGAGTAGTCGGCCTAGCTTTGAACCTATGTGCCTATGACTTCGTTTCCCAGGAAAC 12152038 Query 74251 AAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGA 74310 | ||||| ||||| | | ||||| || ||| | ||||| || |||||| | || || Sbjct 12152037 CCGTGCAGCGGAAGATTCGAAATTTGAGACTTTCAATACTAAAAATATTCTTTTAAACGA 12151978 Query 74311 AGGTATGAGAGCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGA 74370 |||||| | || |||||| | || | ||| | || ||||| ||| || | |||| || Sbjct 12151977 AGGTATTCGTGCTTGGATGGCGGCTCTAGATAAGCCTCATGAAAACCTTATATTCCTTGA 12151918 Query 74371 AGAAGTCTTGCCACGAGGCAACGCACTATAA 74401 || || | ||||| || ||||| || ||| Sbjct 12151917 GGAGGTTCTACCACGTGGAAACGCTCTTTAA 12151887 >seq6 Length=37079636 Score = 98.7 bits (108), Expect = 1e-15 Identities = 160/224 (71%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 72262 AATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTT-CTAACTGCTGC 72320 ||||| | ||| |||| ||||||||||| || ||||| || | ||| | || || | Sbjct 27053895 AATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCC-TACCTTATTGACCGCAAC 27053837 Query 72321 TGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAATCAGAGA 72380 | | ||| | | | |||||||| ||| |||||||||| ||||| || || || | || Sbjct 27053836 TTCCGTTTTTAATATCGCATTCATTGCTACTCCTCCAGTAGATATTGATGGTATTCGTGA 27053777 Query 72381 ACCAGTTGCGGGTTCT-TTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCAT 72439 | | ||| | || ||| ||||| ||||| ||||| || || || ||||| | |||| Sbjct 27053776 ATCTGTTTCTGGATCTCTTCTT-TATGGAAACAATATTATTTCAGGTGCCATTATTCCTA 27053718 Query 72440 CTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGCA 72483 ||||| || || | || || || || || |||||||||||| Sbjct 27053717 CTTCAGCAGCTAT-TGTTTGCATTTTTACCCGATCTGGGAAGCA 27053675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572674734090680