Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4 102 7e-17 seq3 102 7e-17 seq6 86.0 5e-12 seq8 84.2 2e-11 >seq4 Length=23266485 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| ||||||||||| || | ||| |||||||||||| | ||| ||| || | Sbjct 5744743 ATGCAGATATTTGTCAAGACGCTTACCAATAAAACCATTACCCTAGAAGTTGAGAGCTCA 5744802 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || ||| |||||| ||||| ||||| | || ||| || Sbjct 5744803 -GACACCATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGAACA 5744861 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 | |||||||| | ||||||||||||||| ||||||| | | || | ||||| ||||| Sbjct 5744862 GAAGAGACTTATCTTTGCGGGTAAACAGCTCGAGGATGGCCGTACTCTTGCGGACTACAA 5744921 Query 110452 CATTCAAAAAGAATCTACGTTGCAC 110476 ||| ||||| || || || ||||| Sbjct 5744922 CATCCAAAAGGAGTCAACTCTGCAC 5744946 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| ||||| | || || |||| ||||||| | ||| ||| | Sbjct 5744347 ATGCAAATCTTTGTGAAAACACTCACTGGTAAAATCATTACCCTAGAAGTTGAGAGTTCA 5744406 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || ||||||| || |||||||| | || || ||| Sbjct 5744407 GATACAATTGACAACGTCAAGGCGAAGATTCAAGATAAAGAAGGAATCCCTCCTGACCAA 5744466 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||||| || || | ||||||||||||||| || |||| | || | ||||| |||||| Sbjct 5744467 CAAAGGCTAATCTTTGCGGGTAAACAGCTCGAAGATGGTTGTACTCTTGCGGACTACAAC 5744526 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 || || || ||||| || | ||| |||| | || || |||| || Sbjct 5744527 ATCCAGAAGGAATCAACCCTCCACTTGGTTCTCAGGTTGAGAGGTGG 5744573 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||||| ||||||||||| || | || || ||||| |||||| | ||| ||| || | Sbjct 5738463 ATGCAGATATTTGTCAAGACGCTTACTGGTAAAACTATTACCCTAGAAGTTGAGAGCTCA 5738522 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || ||| | | | | | || ||||||| ||||| ||||| | || |||| || Sbjct 5738523 -GACACTATTGACAACATCAAGGCGAAGATTCAAGACAAGGAAGGAATCCCTCTGGACCA 5738581 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| || || || | | | || ||||| || ||||||| | || | ||||| ||||| Sbjct 5738582 ACAGAGGCTAATCTTTACCGGAAAACAACTAGAGGATGGTCGGACTTTAGCGGACTACAA 5738641 Query 110452 CATTCAAAAAGAATCTAC 110469 |||||| ||||| || || Sbjct 5738642 CATTCAGAAAGAGTCAAC 5738659 >seq3 Length=27950219 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG-CCTGA 110331 ||||| ||||||||||| || | || || |||||||||||| | ||| ||| || | Sbjct 14805975 ATGCAGATATTTGTCAAGACACTTACTGGTAAAACCATTACCCTAGAAGTCGAGAGCTCA 14806034 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 | || | | | | || ||| |||||| ||||| ||||| | || ||| | Sbjct 14806035 -TACACCATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGAATCCCTCCGGACTA 14806093 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| ||||| || | ||| || ||||| || ||||||| |||| | |||||||| || Sbjct 14806094 ACAGAGACTCATCTTTGCTGGAAAACAACTTGAGGATGGTCGAACGCTTGCGGATTATAA 14806153 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 |||||| || ||||| || |||| ||||| || | ||| |||| || Sbjct 14806154 CATTCATAAGGAATCAACCCTGCATTTGGTGCTACGTCTGAGAGGTGG 14806201 Score = 98.7 bits (108), Expect = 8e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| ||||| ||||| |||| ||||||||||| || |||| || | || | Sbjct 5226820 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 5226761 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || ||| ||||| || |||||||| | | ||| || Sbjct 5226760 -GACACCATTGACAACGTCAAAGCCAAGATCCAAGATAAAGAAGGAATCTCTCCGGACCA 5226702 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||| |||||||| | ||| ||||||||||| ||||||| | || | ||||||||||| Sbjct 5226701 ACAGAGACTTATCTTTGCCGGTAAACAGCTAGAGGATGGTCGTACTCTTGCGGATTACAA 5226642 Query 110452 CATTCAAAAAGAATCTAC 110469 || ||||| ||||| || Sbjct 5226641 TATCCAAAAGGAATCAAC 5226624 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 |||||||| || || |||||| | || ||||| ||||| || | || || | || Sbjct 5227048 ATGCAAATCTTCGTGAAAACTCTTACGGGCAAGACCATAACACTTGAGGTCGAAAGCTC- 5226990 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| || |||| | || || ||||| ||||||||||| | || ||| || Sbjct 5226989 CGACACCGTCGAAAACGTCAATGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGACCA 5226930 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 |||||| ||||| | ||| ||||||||||| ||||| | | | || |||| |||||||| Sbjct 5226929 ACAAAGGCTTATCTTTGCCGGTAAACAGCTCGAGGACGGCCGTACCTTGGCTGATTACAA 5226870 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||| ||||| || || || | ||| |||| Sbjct 5226869 CATCCAAAAGGAGTCAACTCTCCACTTGGT 5226840 >seq6 Length=37079636 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| |||||| | ||||| || || || || |||| ||| | Sbjct 13446939 ATGCAGATCTTTGTGAAAACTCTCACCGGAAAGACAATCACTCTCGAGGTGGAAAGTTCT 13446998 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | | || ||| ||||||| || || ||||| | || |||||| Sbjct 13446999 GATACGATCGACAATGTTAAAGCGAAGATTCAGGATAAGGAAGGGATTCCTCCGGATCAG 13447058 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | || ||||| || |||| |||| | || ||||||||||||| Sbjct 13447059 CAGAGATTGATCTTCGCTGGTAAGCAATTGGAAGATGGGCGTACCTTGGCGGATTACAAT 13447118 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTGTT 110484 || || || ||||| || | ||| ||||||| Sbjct 13447119 ATCCAGAAGGAATCAACTCTTCACTTGGTGTT 13447150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC-CTGA 110331 ||| | ||||||||||| || | || || ||||| |||||| | ||| ||| || | Sbjct 33564856 ATGTAGATATTTGTCAAGACACTTACTGGTAAAACGATTACCCTAGAAGTCGAGAGCTCA 33564915 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 || || | | | | || ||| || ||| ||||| ||||| | || ||| || Sbjct 33564916 -GACACCATTGACAATGTTAAAGCTAAAATTCAAGACAAGGAAGGAATCCCTCCGGACCA 33564974 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 || || || || | ||| ||||| ||||| ||||||| |||| | ||||||||||| Sbjct 33564975 GCAGAGGCTGATCTTTGCCGGTAAGCAGCTCGAGGATGGTCGAACTCTTGCGGATTACAA 33565034 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| || || ||||| || | ||| |||| | || || |||| || Sbjct 33565035 CATCCAGAAGGAATCAACCCTCCACTTGGTCCTCAGGTTGAGAGGAGG 33565082 >seq8 Length=40886855 Score = 84.2 bits (92), Expect = 2e-11 Identities = 164/238 (69%), Gaps = 6/238 (3%) Strand=Plus/Minus Query 110265 GATTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG 110323 |||| | ||||||||||| || |||||| | || || || ||||| || |||| || Sbjct 1190291 GATTATAGATGCAAATATTCGTGAAAACTCTTACTGGAAAGACCATAACTCTCGAGGTCG 1190232 Query 110324 -GAGC-CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGC 110381 |||| ||||| ||| ||| | || || ||||| ||||| ||||| | | Sbjct 1190231 AGAGCTCTGAC---ACTATCGATAATGTTAAGGCAAAGATCCAGGACAAGGAAGGTATTC 1190175 Query 110382 CCGTGGATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGG 110441 | |||||| ||||||||||| | || ||||| || || || |||| || || | | Sbjct 1190174 CTCCGGATCAGCAAAGACTTATCTTCGCTGGTAAGCAACTTGAAGATGGAAGGACTCTTG 1190115 Query 110442 CGGATTACAACATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 | || ||||| || || || || || || |||||| |||| | || || |||| || Sbjct 1190114 CCGACTACAATATCCAGAAGGAGTCGACCTTGCACTTGGTTCTCCGATTGAGAGGTGG 1190057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412701870019103