Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq6 109 4e-19 seq8 95.1 8e-15 seq5 82.4 5e-11 seq1 82.4 5e-11 >seq6 Length=37079636 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 || ||||| ||||| ||| ||||||||||||||| ||||| | || | | || |||| Sbjct 19969775 CAAGACCAAGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCGGCTAAGGTCCGACCATC 19969834 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 || || |||||||| || || || || || |||||||| | || | ||| || ||||| Sbjct 19969835 CTCAAGCTGCTTTCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATCCCTTCTTTGTC 19969894 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | || | |||||| || | ||| ||||| Sbjct 19969895 CTGGATCTTGGCCTTGACGTTGTCAATAGTGTCTGAGCTCTCGACCTCGAGGGTAATGGT 19969954 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | |||||| || ||||||||||| Sbjct 19969955 CTTACCAGTCAAGGTCTTGACGAAGATCTGCAT 19969987 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | || ||||||||| ||||| ||||| | | |||| |||| Sbjct 19969548 AGGACCAAGTGGAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCCAAAGTGCGACCATCC 19969607 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || || || || |||||||| || || |||||||| | || | || |||||||| Sbjct 19969608 TCAAGCTGTTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGGATACCTTCCTTGTCC 19969667 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || ||||| | || | ||| | |||||| |||| ||| |||||| Sbjct 19969668 TGGATCTTAGCCTTGACATTGTCAATTGTGTCAGAGCTCTCGACTTCAAGGGTGATGGTC 19969727 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| || || ||||| || || |||||||| Sbjct 19969728 TTTCCAGTAAGAGTCTTCACGAAAATCTGCAT 19969759 Score = 96.9 bits (106), Expect = 2e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 ||||||||||||||||| |||| || | || |||| || ||||| ||||| || ||| Sbjct 33565274 TCCTTCTGAATGTTATAATCCGCAAGCGTTCGACCATCCTCAAGTTGTTTTCCAGCAAAG 33565215 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || |||| || ||||| | || | ||| |||||||| | || || |||||| Sbjct 33565214 ATGAGTCTCTGTTGGTCCGGAGGGATCCCTTCCTTGTCTTGAATCTTCGCCTTGACGTTG 33565155 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | ||| || || | ||| || || || || |||||||| || ||| Sbjct 33565154 TCAATGGTGTCTGAGCTCTCAACTTCTAGGGTAATAGTTTTACCAGTGAGGGTTTTCACA 33565095 Query 34967 AAGATCTGCAT 34977 ||||||||||| Sbjct 33565094 AAGATCTGCAT 33565084 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34762 CCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTC 34821 ||| || |||| ||||| || ||||||||| || || || |||| | | | || | Sbjct 19970456 CCTGAGAACCAAGTGAAGAGTCGACTCCTTCTGGATATTGTAATCCGCCAAGGTACGGCC 19970515 Query 34822 ATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTT 34881 ||| |||| |||||||| |||||||||| || ||||| || | || | |||||||| Sbjct 19970516 ATCTTCCAACTGCTTTCCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATTCCCTCCTT 19970575 Query 34882 GTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTAT 34941 || | || || || ||| | |||| ||| || || || | ||| || Sbjct 19970576 ATCTTGGATCTTAGCCTTAACGTTGTCGATCGTGTCAGAACTTTCCACCTCGAGGGTGAT 19970635 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||||||| ||||| || || |||||||||||||| Sbjct 19970636 AGTCTTTCCGGTGAGAGTTTTCACAAAGATCTGCAT 19970671 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34786 CTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAA 34845 ||| ||||| || || ||||| | || | | | || || ||||||||||||||||| Sbjct 19970024 CTCTTTCTGGATATTGTAGTCGGCCAGAGTTCTGCCGTCCTCGAGTTGCTTTCCGGCGAA 19970083 Query 34846 GATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGA 34905 |||| || ||||||||| | || | ||||| ||||| | ||||| |||||| Sbjct 19970084 AATCAATCTTTGCTGGTCCGGAGGAATACCCTCTTTGTCCTGGATTTTGGCCTTGACGTT 19970143 Query 34906 TGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTAC 34965 | || | || | || || || | ||| |||||||| || || | |||||| || Sbjct 19970144 GTCAATGGTGTCGGAGCTTTCAACTTCCAAGGTGATGGTCTTACCGGTCAAGGTCTTGAC 19970203 Query 34966 AAAGATCTGCAT 34977 |||||||||||| Sbjct 19970204 AAAGATCTGCAT 19970215 Score = 89.7 bits (98), Expect = 3e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||| | | ||| ||||| || |||| || ||||||||| ||||| ||||| | Sbjct 19970217 CCTCCACGAAGCCTGAGGACAAGATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCAGCA 19970276 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | || | || || |||||||||||||| ||||||| | ||||| || | || Sbjct 19970277 AGAGTACGACCGTCCTCAAGTTGCTTTCCGGCAAAGATCAACCTCTGCTGATCCGGAGGA 19970336 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || || ||| | || | ||| ||| || Sbjct 19970337 ATTCCCTCCTTGTCTTGGATCTTAGCCTTAACGTTATCAATGGTGTCAGAACTCTCAACC 19970396 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| || ||||| || || | |||||| || ||||||||||| Sbjct 19970397 TCGAGGGTAATAGTCTTACCAGTCAAGGTCTTAACGAAGATCTGCAT 19970443 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||| | ||| ||| ||||||||||| || |||| || | || |||| Sbjct 13448354 AGGACCAAGTGGAGGGTCGACTCTTTCTGAATGTTGTAATCCGCCAGTGTACGACCATCC 13448295 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || |||||||| || || |||||||| | || | || ||||| || Sbjct 13448294 TCAAGCTGCTTACCAGCGAAGATTAGACGCTGCTGGTCCGGTGGAATACCTTCCTTATCC 13448235 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || ||| | || | ||| | ||| || |||| || || ||| Sbjct 13448234 TGGATCTTGGCCTTCACGTTATCAATAGTATCAGAGCTCTCAACTTCAAGTGTGATTGTC 13448175 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || || |||||||| Sbjct 13448174 TTGCCGGTAAGAGTCTTCACGAAAATCTGCAT 13448143 Score = 84.2 bits (92), Expect = 1e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34769 ACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCC 34828 |||| ||||| || |||||||| || || || |||| | | | ||| |||| ||| Sbjct 13447147 ACCAAGTGAAGAGTTGATTCCTTCTGGATATTGTAATCCGCCAAGGTACGCCCATCTTCC 13447088 Query 34829 AGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTT 34888 | |||||| || |||||||||| || ||||| || | || | ||| ||||| || | Sbjct 13447087 AATTGCTTACCAGCGAAGATCAATCTCTGCTGATCCGGAGGAATCCCTTCCTTATCCTGA 13447028 Query 34889 ATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTT 34948 || || ||| || | |||| ||| || || || | || || |||||| Sbjct 13447027 ATCTTCGCTTTAACATTGTCGATCGTATCAGAACTTTCCACCTCGAGAGTGATTGTCTTT 13446968 Query 34949 CCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| || || |||||||||||||| Sbjct 13446967 CCGGTGAGAGTTTTCACAAAGATCTGCAT 13446939 >seq8 Length=40886855 Score = 95.1 bits (104), Expect = 8e-15 Identities = 161/231 (70%), Gaps = 8/231 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || || ||||| | || |||| ||| | ||| ||||||||| || || ||||| | Sbjct 1190057 CCACCTCTCAATCGGAGAACCAAGTGCAAGGTCGACTCCTTCTGGATATTGTAGTCGGCA 1190116 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || | | |||| || |||||||| || |||||||| |||| |||||| || | || Sbjct 1190117 AGAGTCCTTCCATCTTCAAGTTGCTTACCAGCGAAGATAAGTCTTTGCTGATCCGGAGGA 1190176 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | || |||||||| | || ||| || || || ||||||| ||| | ||| Sbjct 1190177 ATACCTTCCTTGTCCTGGATCTTTGCCTTAAC--AT--TATCGATAGTGTCAGAGCTCTC 1190232 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || | |||||||||||||| || || || || || || || ||||| Sbjct 1190233 GACCTCGAGAGTTATGGTCTTTCCAGTAAGAGTTTTCACGAATATTTGCAT 1190283 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 |||||||| ||||| || |||| || | | |||| || |||||||| ||||||||| Sbjct 1188656 TCCTTCTGGATGTTGTAATCCGCAAGAGTCCTTCCATCTTCAAGTTGCTTACCGGCGAAG 1188715 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || |||| ||||| || | || | ||| |||||||| | || || || || Sbjct 1188716 ATAAGTCTCTGCTGATCCGGAGGAATCCCTTCCTTGTCCTGAATCTTAGCCTTCACATTG 1188775 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 |||| | || | ||| || |||| ||| ||||| || || ||||||||||| || Sbjct 1188776 TCTATTGTGTCTGAGCTCTCCACCTCAAGGGTAATGGTTTTACCAGTGAGGGTCTTCACG 1188835 Query 34967 AAGATCTGCAT 34977 || |||||||| Sbjct 1188836 AATATCTGCAT 1188846 >seq5 Length=22804910 Score = 82.4 bits (90), Expect = 5e-11 Identities = 151/221 (68%), Gaps = 18/221 (8%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| || |||| || || ||||| ||||| ||||| | || | || | || Sbjct 22133789 AGGACAAGATGAAGCGTTGATTCTTTCTGGATGTTGTAGTCAGCGAGAGTACGTCCGTCT 22133730 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| ||||| |||||||| | ||||||||||| | || | || |||||||| Sbjct 22133729 TCGAGTTGTTTTCCAGCGAAGATTAAACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCT 22133670 Query 34886 TTTATTTTTTGTTTGAC-----GGATGCTATC----GATTCATTGGCCTCGACATCAACG 34936 | || || |||||| |||| |||| |||||| |||||| | Sbjct 22133669 TGGATCTTGGCTTTGACATTGTCGATGGTATCTGATGATTCA---ACCTCGAGA------ 22133619 Query 34937 GTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || ||||| ||||| ||||| || || ||||||||||| Sbjct 22133618 GTGATTGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 22133578 >seq1 Length=25238555 Score = 82.4 bits (90), Expect = 5e-11 Identities = 105/144 (73%), Gaps = 2/144 (1%) Strand=Plus/Plus Query 34743 AATCAT--TTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTT 34800 |||||| |||| ||||| | ||||| |||| |||| || ||| ||||||||||| Sbjct 21980162 AATCATGGTTCCACCCCTAAGCCTCAAAACCAAATGAAGCGTCGACTCTTTCTGAATGTT 21980221 Query 34801 ATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTG 34860 ||||||| ||| | || |||| || ||||| || || || ||||||| || || || Sbjct 21980222 GTAGTCCGCTAGTGTACGACCATCTTCAAGTTGTTTACCAGCAAAGATCAATCTCTGTTG 21980281 Query 34861 GTCTTGCGGCACCCCCTCCTTGTC 34884 ||| | || | ||||| ||||| Sbjct 21980282 ATCTGGTGGTATTCCCTCTTTGTC 21980305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325582566320249