Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Arabis_20alpina_20[genbank_20GCA_5F000733195.1_202014-08-12] 27,771 sequences; 308,032,609 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4 102 6e-17 seq6 100 2e-16 seq3 98.7 8e-16 >seq4 Length=23266485 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || | || |||||||||||| | ||| ||| ||| Sbjct 5744743 ATGCAGATATTTGTCAAGACGCTTACCAATAAAACCATTACCCTAGAAGTTGAGAGCTCA 5744802 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| |||||| || || ||||| | || ||| || Sbjct 5744803 -GACACCATTGACAATGTTAAAGCTAAGATTCAAGACAAGGAAGGGATCCCTCCGGAACA 5744861 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 | |||||||||| | ||||||||||||||| ||||| | | || | ||||||||||| Sbjct 5744862 GAAGAGACTTATCTTTGCGGGTAAACAGCTCGAGGATGGCCGTACTCTTGCGGACTACAA 5744921 Query 107735 CATTCAAAAGGAGTCTACGTTGCAC 107759 ||| ||||||||||| || ||||| Sbjct 5744922 CATCCAAAAGGAGTCAACTCTGCAC 5744946 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| ||||| ||||| | || || |||| ||||||| | ||| ||| | Sbjct 5744347 ATGCAAATCTTTGTGAAAACACTCACTGGTAAAATCATTACCCTAGAAGTTGAGAGTTCA 5744406 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || |||||| ||||||||||| | || || || Sbjct 5744407 GATACAATTGACAACGTCAAGGCGAAGATTCAAGATAAAGAAGGAATCCCTCCTGACCAA 5744466 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || || || || | ||||||||||||||| || || | || | |||||||||||| Sbjct 5744467 CAAAGGCTAATCTTTGCGGGTAAACAGCTCGAAGATGGTTGTACTCTTGCGGACTACAAC 5744526 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || || ||||| || || | ||| |||| | || ||| |||| || Sbjct 5744527 ATCCAGAAGGAATCAACCCTCCACTTGGTTCTCAGGTTGAGAGGTGG 5744573 >seq6 Length=37079636 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 |||||||| || || || || || || || || |||||||| |||| |||| ||| Sbjct 13447687 ATGCAAATCTTCGTTAAGACCTTGACTGGTAAGACCATTACTCTCGAGGTGGAGAGCTCT 13447746 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || |||||| ||||| ||||| | || ||| || Sbjct 13447747 -GACACTATTGACAACGTGAAGGCAAAGATCCAAGATAAGGAAGGTATTCCACCGGACCA 13447805 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | || | ||| || || ||||| ||||| | || |||| |||||||| Sbjct 13447806 GCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGTCGTACCTTGGCTGACTACAA 13447865 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 || |||||||||||||| |||||| |||||||| Sbjct 13447866 TATCCAAAAGGAGTCTACATTGCACTTGGTGTTG 13447899 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 ||||| || |||||||| ||||| || || || || || || | || || | ||| | Sbjct 33565312 ATGCAGATATTTGTCAAGACTTTGACGGGAAAGACGATAACTCTTGAGGTCGAAAGCTCG 33565371 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | | || ||| |||||| ||||| ||||| | || ||| || Sbjct 33565372 -GATACAATTGACAATGTGAAAGCGAAGATTCAAGATAAGGAAGGGATCCCTCCGGACCA 33565430 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || || | |||||| ||||| || || || | ||| | ||||||||||| Sbjct 33565431 GCAGAGGCTAATCTTTGCGGGAAAACAACTCGAAGATGGTCGGACATTAGCGGACTACAA 33565490 Query 107735 CATTCAAAAGGAGTCTAC 107752 |||||| || ||||| || Sbjct 33565491 CATTCAGAAAGAGTCAAC 33565508 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || || ||||| || || || || || ||||||||| |||| ||| ||| Sbjct 19969987 ATGCAGATCTTCGTCAAGACCTTGACTGGTAAGACCATTACCCTCGAGGTCGAGAGCTCA 19969928 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || ||| | | | | || || ||||| || |||||||| | || ||| || Sbjct 19969927 -GACACTATTGACAACGTCAAGGCCAAGATCCAGGACAAAGAAGGGATCCCTCCGGACCA 19969869 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | || |||| ||| || || ||||| ||||| | || | || |||||||| Sbjct 19969868 GCAGCGTCTCATTTTTGCTGGAAAGCAGCTTGAGGATGGTCGGACCTTAGCCGACTACAA 19969809 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 |||||| |||||||| || | ||| |||| ||| Sbjct 19969808 CATTCAGAAGGAGTCGACCCTTCACTTGGTCTTG 19969775 >seq3 Length=27950219 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 |||||||| || || |||||| | || ||||| ||||| || | || || | ||| Sbjct 5227048 ATGCAAATCTTCGTGAAAACTCTTACGGGCAAGACCATAACACTTGAGGTCGAAAGCTC- 5226990 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| || |||| | || || ||||| || |||||||| | || ||| || Sbjct 5226989 CGACACCGTCGAAAACGTCAATGCCAAGATCCAAGACAAAGAAGGAATCCCTCCGGACCA 5226930 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 || || ||||| | ||| ||||||||||| ||||||| | || |||| || ||||| Sbjct 5226929 ACAAAGGCTTATCTTTGCCGGTAAACAGCTCGAGGACGGCCGTACCTTGGCTGATTACAA 5226870 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||| ||||||||||| || | ||| |||| || | ||| |||| || Sbjct 5226869 CATCCAAAAGGAGTCAACTCTCCACTTGGTTCTGCGTTTGAGAGGAGG 5226822 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAA-CGGAGGCTGG 107614 |||||||| ||||| ||||| |||| ||||||||||| || |||| || | ||| Sbjct 5226820 ATGCAAATCTTTGTGAAAACCCTAACTGGCAAAACCATAACACTCGAGGTCGAAAGCTCA 5226761 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | | || ||| ||||| ||||||||||| | | ||| || Sbjct 5226760 -GACACCATTGACAACGTCAAAGCCAAGATCCAAGATAAAGAAGGAATCTCTCCGGACCA 5226702 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||||| | ||| ||||||||||| ||||| | || | ||||| ||||| Sbjct 5226701 ACAGAGACTTATCTTTGCCGGTAAACAGCTAGAGGATGGTCGTACTCTTGCGGATTACAA 5226642 Query 107735 CATTCAAAAGGAGTCTAC 107752 || |||||||| || || Sbjct 5226641 TATCCAAAAGGAATCAAC 5226624 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||||| | |||||| ||||||||| ||||| || ||| Sbjct 16879155 ATGCAGATTTTTGTGAAGACTTTGATAGGCAAGACCATTACCCTCGAAGTTGAAAGCTT- 16879213 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||| ||| | | | | || || ||||| || || ||| | | || ||| | Sbjct 16879214 CGACACTATTGACAACGTCAAGGCTAAGATCCAGGACAAGGAATGAATCCCACCGGACGA 16879273 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||||||||| || | || ||||| ||||| || || | | ||| | || ||||| || Sbjct 16879274 GCAGAGACTCATATTCGCCGGTAAGCAGCTTGAAGATGGAAGGACACTCGCTGACTATAA 16879333 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| || ||||||||||| Sbjct 16879334 CATCCAGAAGGAGTCTAC 16879351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398741796532219